S4_using_G12

Super-paramagnetic Clustering of 69 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	61		80.cel
2	16		15.cel
3	24		218.cel
4	32		283.cel
5	23	S377	190.cel
6	30	S377	269.cel
7	7	S375 S377	1308.cel
8	18	S375 S377	157.cel
9	12	S375 S377	1437.cel
10	19	S375 S377	159.cel
11	2	S375 S377	104.cel
12	13	S375 S377	1453.cel
13	5	S375 S377	1284.cel
14	25	S375 S377	222.cel
15	17	S375 S377	155R.cel
16	37	S375 S377	323.cel
17	35	S375 S377	30.cel
18	27	S375 S377	242.cel
19	51	S375 S377	527.cel
20	38	S375 S377	328.cel
21	40	S375 S377	345.cel
22	45	S375 S377	396.cel
23	28	S375 S377	246.cel
24	50	S375 S377	506.cel
25	55	S375 S377	563.cel
26	3	S372 S374 S375 S377	106.cel
27	4	S372 S374 S375 S377	12.cel
28	62	S372 S374 S375 S377	83.cel
29	11	S372 S374 S375 S377	1430.cel
30	10	S372 S374 S375 S377	1399.cel
31	57	S372 S374 S375 S377	57.cel
32	69	S372 S374 S375 S377	ge205.cel
33	65	S374 S375 S377	93.cel
34	43	S375 S377	360.cel
35	52	S375 S377	528bis.cel
36	1	S375 S377	100R.cel
37	54	S375 S377	558.cel
38	44	S375 S377	390.cel
39	60	S375 S377	70.cel
40	9	S375 S377	1360.cel
41	29	S375 S377	254.cel
42	26	S375 S377	236.cel
43	34	S375 S377	288.cel
44	63	S375 S377	84.cel
45	20	S375 S377	1621.cel
46	39	S375 S377	344.cel
47	56	S375 S377	566.cel
48	14	S375 S377	147.cel
49	64	S375 S377	90.cel
50	46	S375 S377	428.cel
51	48	S375 S377	458.cel
52	8	S373 S375 S377	1317.cel
53	22	S373 S375 S377	1854R.cel
54	21	S373 S375 S377	1622R.cel
55	66	S373 S375 S377	94bis.cel
56	59	S375 S377	65R.cel
57	67	S375 S377	97.cel
58	53	S375 S377	547.cel
59	42	S375 S377	356bis.cel
60	33	S377	284.cel
61	58	S377	574.cel
62	36	S377	300.cel
63	6	S377	129.cel
64	41	S377	349.cel
65	15	S376	1497R.cel
66	31	S376	274.cel
67	49	S376	461.cel
68	47	S376	444.cel
69	68	S376	ge197.cel

Genes Names

1	56	225415_at	BBAP Chr:3q21.1
2	53	223220_s_at	BAL Chr:3q13-q21
3	63	228531_at	FLJ20073 Chr:7q21.3
4	33	209417_s_at	IFI35 Chr:17q21
5	16	203148_s_at	TRIM14 Chr:9q31.1
6	62	228152_s_at	FLJ31033 Chr:4q32.3
7	42	214453_s_at	IFI44 Chr:1p31.1
8	47	218986_s_at	FLJ20035 Chr:4q32.3
9	45	218543_s_at	ZC3HDC1 Chr:7q34
10	70	232375_at	--- ---
11	48	219209_at	MDA5 Chr:2p24.3-q24.3
12	46	218943_s_at	DDX58 Chr:9p12
13	3	200887_s_at	STAT1 Chr:2q32.2
14	79	AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
15	80	AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
16	35	209969_s_at	STAT1 Chr:2q32.2
17	51	219684_at	IFRG28 Chr:3q28
18	27	205552_s_at	OAS1 Chr:12q24.1
19	52	219863_at	CEB1 Chr:4q22.1-q23
20	71	235157_at	--- ---
21	44	218400_at	OAS3 Chr:12q24.2
22	25	204994_at	MX2 Chr:21q22.3
23	24	204972_at	OAS2 Chr:12q24.2
24	64	228607_at	OAS2 Chr:12q24.2
25	6	202086_at	MX1 Chr:21q22.3
26	23	204439_at	C1orf29 Chr:1p31.1
27	15	202869_at	OAS1 Chr:12q24.1
28	26	205483_s_at	G1P2 Chr:1p36.33
29	72	235276_at	EPSTI1 Chr:13q13.3
30	40	213797_at	cig5 Chr:2p25.2
31	49	219211_at	USP18 Chr:22q11.21
32	22	204415_at	G1P3 Chr:1p35
33	10	202411_at	IFI27 Chr:14q32
34	76	242625_at	cig5 Chr:2p25.2
35	59	226702_at	LOC129607 Chr:2p25.2
36	66	229450_at	IFIT4 Chr:10q24
37	50	219352_at	FLJ20637 Chr:4q22.1
38	60	226757_at	IFIT2 Chr:10q23-q25
39	17	203153_at	IFIT1 Chr:10q25-q26
40	58	226603_at	FLJ39885 Chr:7q21.3
41	67	230036_at	FLJ39885 Chr:7q21.3
42	18	203964_at	NMI Chr:2p24.3-q21.3
43	57	226474_at	NOD27 Chr:16q13
44	32	209040_s_at	PSMB8 Chr:6p21.3
45	21	204279_at	PSMB9 Chr:6p21.3
46	9	202307_s_at	TAP1 Chr:6p21.3
47	78	38241_at	BTN3A3 Chr:6p21.3
48	5	201641_at	BST2 Chr:19p13.2
49	73	235643_at	FLJ39885 Chr:7q21.3
50	77	243271_at	--- ---
51	39	213293_s_at	TRIM22 Chr:11p15
52	14	202864_s_at	SP100 Chr:2q37.1
53	13	202863_at	SP100 Chr:2q37.1
54	11	202430_s_at	PLSCR1 Chr:3q23
55	12	202446_s_at	PLSCR1 Chr:3q23
56	36	210705_s_at	TRIM5 Chr:11p15
57	34	209846_s_at	BTN3A2 Chr:6p22.1
58	43	217933_s_at	LAP3 Chr:4p15.33
59	75	241916_at	PLSCR1 Chr:3q23
60	7	202269_x_at	GBP1 Chr:1p22.2
61	20	204205_at	APOBEC3G Chr:22q13.1-q13.2
62	8	202270_at	GBP1 Chr:1p22.2
63	68	231577_s_at	GBP1 Chr:1p22.2
64	38	211911_x_at	HLA-C Chr:6p21.3
65	31	208729_x_at	HLA-B Chr:6p21.3
66	37	211368_s_at	CASP1 Chr:11q23
67	19	204070_at	RARRES3 Chr:11q23
68	2	1552703_s_at	CASP1 Chr:11q23
69	4	200904_at	HLA-E Chr:6p21.3
70	1	1552701_a_at	COP Chr:11q22
71	28	206011_at	CASP1 Chr:11q23
72	69	232024_at	HIMAP2 Chr:7q36.1
73	29	206082_at	HCP5 Chr:6p21.3
74	41	214059_at	IFI44 Chr:1p31.1
75	74	239587_at	--- ---
76	65	228617_at	HSXIAPAF1 Chr:17p13.2
77	30	206133_at	HSXIAPAF1 Chr:17p13.2
78	54	223434_at	GBP3 Chr:1p22.2
79	55	225171_at	ARHGAP18 Chr:6q23.1
80	61	227458_at	PDCD1LG1 Chr:9p24

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 19:49:12

S4_using_G12

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC