S4_using_G10

Super-paramagnetic Clustering of 69 points in a 95 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	12		1437.cel
2	6	S356 S357	129.cel
3	1	S356 S357	100R.cel
4	7	S356 S357	1308.cel
5	23	S356 S357	190.cel
6	10	S356 S357	1399.cel
7	40	S356 S357	345.cel
8	57	S356 S357	57.cel
9	16	S356 S357	15.cel
10	30	S356 S357	269.cel
11	32	S356 S357	283.cel
12	60	S350 S351 S353 S357	70.cel
13	26	S350 S351 S353 S357	236.cel
14	19	S350 S351 S353 S357	159.cel
15	67	S350 S351 S353 S357	97.cel
16	22	S348 S350 S351 S353 S357	1854R.cel
17	42	S348 S350 S351 S353 S357	356bis.cel
18	25	S348 S350 S351 S353 S357	222.cel
19	45	S348 S350 S351 S353 S357	396.cel
20	35	S350 S351 S353 S357	30.cel
21	20	S350 S351 S353 S357	1621.cel
22	2	S350 S351 S353 S357	104.cel
23	47	S350 S351 S353 S357	444.cel
24	48	S350 S351 S353 S357	458.cel
25	21	S350 S351 S353 S357	1622R.cel
26	24	S351 S353 S357	218.cel
27	5	S351 S353 S357	1284.cel
28	8	S351 S353 S357	1317.cel
29	27	S351 S353 S357	242.cel
30	9	S349 S351 S353 S357	1360.cel
31	66	S349 S351 S353 S357	94bis.cel
32	31	S349 S351 S353 S357	274.cel
33	39	S349 S351 S353 S357	344.cel
34	14	S349 S351 S353 S357	147.cel
35	15	S349 S351 S353 S357	1497R.cel
36	38	S349 S351 S353 S357	328.cel
37	41	S349 S351 S353 S357	349.cel
38	18	S349 S351 S353 S357	157.cel
39	55	S349 S351 S353 S357	563.cel
40	64	S349 S351 S353 S357	90.cel
41	53	S351 S353 S357	547.cel
42	29	S351 S353 S357	254.cel
43	28	S351 S353 S357	246.cel
44	51	S351 S353 S357	527.cel
45	59	S351 S353 S357	65R.cel
46	63	S351 S353 S357	84.cel
47	56	S351 S353 S357	566.cel
48	49	S351 S353 S357	461.cel
49	46	S353 S357	428.cel
50	17	S353 S357	155R.cel
51	37	S353 S357	323.cel
52	13	S357	1453.cel
53	50	S357	506.cel
54	34	S352 S354 S355 S357	288.cel
55	44	S352 S354 S355 S357	390.cel
56	33	S352 S354 S355 S357	284.cel
57	54	S352 S354 S355 S357	558.cel
58	69	S352 S354 S355 S357	ge205.cel
59	68	S354 S355 S357	ge197.cel
60	61	S355 S357	80.cel
61	65	S357	93.cel
62	36	S357	300.cel
63	3	S357	106.cel
64	11	S357	1430.cel
65	62	S357	83.cel
66	43	S357	360.cel
67	4		12.cel
68	52		528bis.cel
69	58		574.cel

Genes Names

1	14	203798_s_at	VSNL1 Chr:2p24.3
2	66	228262_at	FLJ14503 Chr:xp22.13
3	28	206376_at	SLC6A15 Chr:12q21.3
4	65	227702_at	CYP4X1 Chr:1p33
5	29	206456_at	GABRA5 Chr:15q11.2-q12
6	93	243929_at	--- ---
7	52	219937_at	TRHDE Chr:12q15-q21
8	44	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	49	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	30	206678_at	GABRA1 Chr:5q34-q35
13	77	233002_at	KIAA1622 Chr:14q32.2
14	71	230137_at	FLJ30834 Chr:4q27
15	53	220030_at	STYK1 Chr:12p13.31
16	31	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	17	204081_at	NRGN Chr:11q24
20	39	213921_at	SST Chr:3q28
21	22	205113_at	NEF3 Chr:8p21
22	18	204229_at	SLC17A7 Chr:19q13
23	90	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	75	231489_x_at	--- ---
26	26	205827_at	CCK Chr:3p22-p21.3
27	94	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	60	224650_at	MAL2 Chr:8q23
31	16	203999_at	SYT1 Chr:12cen-q21
32	37	210247_at	SYN2 Chr:3p25
33	76	232426_at	--- ---
34	95	52837_at	KIAA1644 Chr:22q13
35	54	220359_s_at	ARPP-21 Chr:3p22.1
36	55	221217_s_at	A2BP1 Chr:16p13.3
37	15	203998_s_at	SYT1 Chr:12cen-q21
38	36	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	73	230551_at	--- ---
41	80	237384_x_at	--- ---
42	79	236456_at	PTPN5 Chr:11p15.1
43	89	241807_x_at	--- ---
44	24	205635_at	HAPIP Chr:3q21.2
45	40	214044_at	RYR2 Chr:1q42.1-q43
46	10	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	67	229039_at	SYN2 Chr:3p25
48	19	204546_at	KIAA0513 Chr:16q24.1
49	12	202507_s_at	SNAP25 Chr:20p12-p11.2
50	51	219671_at	HPCAL4 Chr:1p34.2
51	62	226086_at	SYT13 Chr:11p12-p11
52	23	205414_s_at	KIAA0672 Chr:17p12
53	50	219659_at	ATP8A2 Chr:13q12-13
54	35	210040_at	SLC12A5 Chr:20q13.12
55	87	241399_at	TAFA2 Chr:12q13.3-q14.1
56	61	225111_s_at	NAPB Chr:20p12.3-p11.21
57	85	239765_at	--- ---
58	64	227053_at	PACSIN1 Chr:6p21.3
59	45	214956_at	--- ---
60	83	239357_at	--- ---
61	41	214098_at	KIAA1107 Chr:1p22.1
62	43	214811_at	KIAA0318 Chr:12q24.33
63	59	224209_s_at	GDA Chr:9q21.11-21.33
64	25	205691_at	SYNGR3 Chr:16p13
65	33	209726_at	CA11 Chr:19q13.3
66	84	239579_at	ABHD7 Chr:1p22.1
67	58	224164_at	TPM3 Chr:1q21.2
68	68	229254_at	DKFZp761N1114 Chr:1q32.1
69	88	241672_at	LOC400120 Chr:13q13.2
70	46	215241_at	TMEM16C Chr:11p14.3
71	11	202260_s_at	STXBP1 Chr:9q34.1
72	27	206196_s_at	RPIP8 Chr:17q21.31
73	56	223529_at	SYT4 Chr:18q12.3
74	20	204722_at	SCN3B Chr:11q24.1
75	42	214230_at	CDC42 Chr:1p36.1
76	78	235066_at	MAP4 Chr:3p21
77	57	223654_s_at	BRUNOL4 Chr:18q12
78	82	238966_at	BRUNOL4 Chr:18q12
79	34	210016_at	MYT1L Chr:2p25.3
80	69	229300_at	--- ---
81	92	243666_at	BRUNOL4 Chr:18q12
82	13	202712_s_at	CKMT1 Chr:15q15
83	21	204723_at	SCN3B Chr:11q24.1
84	72	230262_at	--- ---
85	91	242999_at	ARHGEF7 Chr:13q34
86	32	209556_at	NCDN Chr:1p34.3
87	63	226382_at	LOC283070 Chr:10p14
88	9	1559545_at	--- ---
89	47	218623_at	HMP19 Chr:5q35.2
90	70	230076_at	FLJ10156 Chr:17p13.2
91	81	238786_at	--- ---
92	38	213904_at	--- ---
93	48	219308_s_at	AK5 Chr:1p31
94	74	230698_at	--- ---
95	86	239767_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 19:16:23

S4_using_G10

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC