S3_using_G9

Super-paramagnetic Clustering of 4 points in a 32 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1				1076.cel
2	2				148.cel
3	3				1553.cel
4	4				1780.cel

Genes Names

1	3	200632_s_at		NDRG1 Chr:8q24.3
2	6	202497_x_at		SLC2A3 Chr:12p13.3
3	11	203108_at		RAI3 Chr:12p13-p12.3
4	7	202627_s_at		SERPINE1 Chr:7q21.3-q22
5	8	202859_x_at		IL8 Chr:4q13-q21
6	13	203438_at		STC2 Chr:5q35.2
7	9	202912_at		ADM Chr:11p15.4
8	10	202934_at		HK2 Chr:2p13
9	19	212171_x_at		VEGF Chr:6p12
10	5	201169_s_at		BHLHB2 Chr:3p26
11	2	1554452_a_at		HIG2 Chr:7q32.2
12	30	226452_at		PDK1 Chr:2q31.1
13	1	1553392_at		FLJ25818 Chr:17q24.1
14	16	210512_s_at		VEGF Chr:6p12
15	18	211527_x_at		VEGF Chr:6p12
16	28	222646_s_at		ERO1L Chr:14q22.1
17	4	200737_at		PGK1 Chr:xq13
18	23	218507_at		HIG2 Chr:7q32.2
19	26	221009_s_at		ANGPTL4 Chr:19p13.3
20	12	203282_at		GBE1 Chr:3p12.3
21	17	210513_s_at		VEGF Chr:6p12
22	14	204298_s_at		LOX Chr:5q23.2
23	21	215446_s_at		--- ---
24	27	221123_x_at		ZNF395 Chr:8p21.1
25	29	223216_x_at		ZNF395 Chr:8p21.1
26	22	218149_s_at		ZNF395 Chr:8p21.1
27	31	232693_s_at		ZNF395 Chr:8p21.1
28	20	212775_at		KIAA0657 Chr:2q36.1
29	15	209122_at		ADFP Chr:9p22.1-p21.3
30	25	219434_at		TREM1 Chr:6p21.1
31	32	242517_at		GPR54 Chr:19p13.3
32	24	219410_at		FLJ10134 Chr:3q12.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:23:29