S3_using_G7

Super-paramagnetic Clustering of 4 points in a 77 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1076.cel
2	2	148.cel
3	3	1553.cel
4	4	1780.cel

Genes Names

1	15	202404_s_at	COL1A2 Chr:7q22.1
2	1	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
3	39	211161_s_at	--- ---
4	56	215076_s_at	COL3A1 Chr:2q31
5	62	221730_at	COL5A2 Chr:2q14-q32
6	14	202403_s_at	COL1A2 Chr:7q22.1
7	5	201505_at	LAMB1 Chr:7q22
8	7	201852_x_at	COL3A1 Chr:2q31
9	61	221729_at	COL5A2 Chr:2q14-q32
10	6	201744_s_at	LUM Chr:12q21.3-q22
11	12	202310_s_at	COL1A1 Chr:17q21.3-q22.1
12	34	208690_s_at	PDLIM1 Chr:10q22-q26.3
13	26	204114_at	NID2 Chr:14q21-q22
14	16	202465_at	PCOLCE Chr:7q22
15	21	202998_s_at	LOXL2 Chr:8p21.3-p21.2
16	4	201438_at	COL6A3 Chr:2q37
17	11	202291_s_at	MGP Chr:12p13.1-p12.3
18	51	212489_at	COL5A1 Chr:9q34.2-q34.3
19	50	212488_at	COL5A1 Chr:9q34.2-q34.3
20	22	203325_s_at	COL5A1 Chr:9q34.2-q34.3
21	41	211651_s_at	LAMB1 Chr:7q22
22	13	202375_at	SEC24D Chr:4q27
23	47	212298_at	NRP1 Chr:10p12
24	68	226777_at	ADAM12 Chr:10q26.3
25	20	202952_s_at	ADAM12 Chr:10q26.3
26	54	213790_at	ADAM12 Chr:10q26.3
27	18	202766_s_at	FBN1 Chr:15q21.1
28	53	213139_at	SNAI2 Chr:8q11
29	72	229218_at	COL1A2 Chr:7q22.1
30	45	211980_at	COL4A1 Chr:13q34
31	3	200771_at	LAMC1 Chr:1q31
32	46	211981_at	COL4A1 Chr:13q34
33	65	225799_at	MGC4677 Chr:2p11.2
34	44	211966_at	COL4A2 Chr:13q34
35	30	204844_at	ENPEP Chr:4q25
36	67	226731_at	ITGA1 Chr:5q11.2
37	60	219773_at	NOX4 Chr:11q14.2-q21
38	32	205572_at	ANGPT2 Chr:8p23.1
39	59	219134_at	ELTD1 Chr:1p33-p32
40	28	204677_at	CDH5 Chr:16q22.1
41	48	212364_at	MYO1B Chr:2q12-q34
42	55	214081_at	PLXDC1 Chr:17q21.1
43	2	200700_s_at	KDELR2 Chr:7p22.2
44	38	211148_s_at	ANGPT2 Chr:8p23.1
45	43	211964_at	COL4A2 Chr:13q34
46	75	236034_at	FLJ12847 Chr:8p23.1
47	76	237261_at	FLJ12847 Chr:8p23.1
48	8	202007_at	NID Chr:1q43
49	19	202878_s_at	C1QR1 Chr:20p11.22
50	37	210495_x_at	FN1 Chr:2q34
51	57	216442_x_at	FN1 Chr:2q34
52	25	204083_s_at	TPM2 Chr:9p13.2-p13.1
53	29	204682_at	LTBP2 Chr:14q24
54	10	202202_s_at	LAMA4 Chr:6q21
55	27	204464_s_at	EDNRA Chr:4q31.22
56	33	207714_s_at	SERPINH1 Chr:11q13.5
57	42	211719_x_at	FN1 Chr:2q34
58	49	212464_s_at	FN1 Chr:2q34
59	58	218729_at	LXN Chr:3q25.32
60	64	225681_at	CTHRC1 Chr:8q22.3
61	71	228776_at	--- ---
62	66	226311_at	--- ---
63	74	232458_at	COL3A1 Chr:2q31
64	9	202112_at	VWF Chr:12p13.3
65	73	230061_at	LOC116441 Chr:3q24
66	31	205499_at	SRPUL Chr:xq21.33-q23
67	17	202709_at	FMOD Chr:1q32
68	36	209596_at	DKFZp564I1922 Chr:xp22.33
69	40	211343_s_at	COL13A1 Chr:10q22
70	69	226804_at	FAM20A Chr:17q24.3
71	77	241981_at	FAM20A Chr:17q24.3
72	24	204017_at	KDELR3 Chr:22q13.1
73	35	209156_s_at	COL6A2 Chr:21q22.3
74	63	224833_at	ETS1 Chr:11q23.3
75	23	203851_at	IGFBP6 Chr:12q13
76	52	213125_at	OLFML2B Chr:1q23.1
77	70	227628_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:18:43

S3_using_G7

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC