S3_using_G6

Super-paramagnetic Clustering of 4 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1076.cel
2	2	148.cel
3	3	1553.cel
4	4	1780.cel

Genes Names

1	27	204825_at	MELK Chr:9p13.1
2	19	204162_at	KNTC2 Chr:18p11.31
3	4	202503_s_at	KIAA0101 Chr:15q22.1
4	40	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	49	218039_at	NUSAP1 Chr:15q14
7	66	222848_at	FKSG14 Chr:5p15.2-q12.3
8	52	218662_s_at	HCAP-G Chr:4p16-p15
9	14	203755_at	BUB1B Chr:15q15
10	46	214710_s_at	CCNB1 Chr:5q12
11	16	204026_s_at	ZWINT Chr:10q21-q22
12	9	203213_at	CDC2 Chr:10q21.1
13	22	204244_s_at	ASK Chr:7q21.3
14	36	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	41	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	7	202705_at	CCNB2 Chr:15q21.3
19	54	218755_at	KIF20A Chr:5q31
20	10	203358_s_at	EZH2 Chr:7q35-q36
21	15	203764_at	DLG7 Chr:14q22.2
22	57	219148_at	TOPK Chr:8p21.2
23	8	202870_s_at	CDC20 Chr:1p34.1
24	75	228273_at	FLJ11029 Chr:17q23.2
25	53	218663_at	HCAP-G Chr:4p16-p15
26	59	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	77	228729_at	CCNB1 Chr:5q12
28	12	203554_x_at	PTTG1 Chr:5q35.1
29	18	204146_at	PIR51 Chr:12p13.2-p13.1
30	50	218355_at	KIF4A Chr:xq13.1
31	28	204962_s_at	CENPA Chr:2p24-p21
32	56	218883_s_at	KLIP1 Chr:4q35.1
33	48	218009_s_at	PRC1 Chr:15q26.1
34	42	210559_s_at	CDC2 Chr:10q21.1
35	35	207828_s_at	CENPF Chr:1q32-q41
36	39	209642_at	BUB1 Chr:2q14
37	65	222740_at	ATAD2 Chr:8q24.13
38	68	223381_at	CDCA1 Chr:1q23.2
39	58	219306_at	KNSL7 Chr:3p21.32
40	44	213226_at	PMSCL1 Chr:4q27
41	60	219918_s_at	ASPM Chr:1q31
42	80	230165_at	SGOL2 Chr:2q33.2
43	23	204444_at	KIF11 Chr:10q24.1
44	29	205046_at	CENPE Chr:4q24-q25
45	11	203362_s_at	MAD2L1 Chr:4q27
46	43	213007_at	FLJ10719 Chr:15q25-q26
47	82	236641_at	KIF14 Chr:1pter-q31.3
48	26	204822_at	TTK Chr:6q13-q21
49	38	209172_s_at	CENPF Chr:1q32-q41
50	76	228323_at	AF15Q14 Chr:15q14
51	71	226980_at	XTP1 Chr:5q12.1
52	63	222077_s_at	RACGAP1 Chr:12q13.12
53	51	218585_s_at	RAMP Chr:1q32.1-q32.2
54	64	222680_s_at	RAMP Chr:1q32.1-q32.2
55	25	204641_at	NEK2 Chr:1q32.2-q41
56	83	238756_at	LOC283431 Chr:12q23.3
57	69	224428_s_at	CDCA7 Chr:2q31
58	6	202589_at	TYMS Chr:18p11.32
59	67	223229_at	HSPC150 Chr:1q32.1
60	5	202580_x_at	FOXM1 Chr:12p13
61	20	204170_s_at	CKS2 Chr:9q22
62	55	218875_s_at	FBXO5 Chr:6q25-q26
63	62	222039_at	LOC146909 Chr:17q21.31
64	70	225834_at	MGC57827 ---
65	72	227249_at	NDE1 Chr:16p13.11
66	84	242560_at	FANCD2 Chr:3p26
67	32	206102_at	KIAA0186 Chr:20p11.21
68	17	204033_at	TRIP13 Chr:5p15.33
69	37	208808_s_at	HMGB2 Chr:4q31
70	74	228033_at	E2F7 Chr:12q21.1
71	34	207165_at	HMMR Chr:5q33.2-qter
72	79	229490_s_at	IQGAP3 Chr:1q23.1
73	81	235425_at	SGOL2 Chr:2q33.2
74	47	216237_s_at	MCM5 Chr:22q13.1
75	13	203560_at	GGH Chr:8q12.2
76	21	204240_s_at	SMC2L1 Chr:9q31.2
77	33	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	61	220239_at	KLHL7 Chr:7p15.3
79	45	213906_at	MYBL1 Chr:8q22
80	24	204510_at	CDC7 Chr:1p22
81	73	227350_at	--- ---
82	31	205967_at	HIST1H4C Chr:6p21.3
83	30	205394_at	CHEK1 Chr:11q24-q24
84	78	229305_at	KLIP1 Chr:4q35.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:16:00

S3_using_G6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC