S3_using_G5

Super-paramagnetic Clustering of 4 points in a 68 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1076.cel
2	4	1780.cel
3	2	148.cel
4	3	1553.cel

Genes Names

1	10	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	39	230763_at	LOC128153 Chr:1q41
4	37	229816_at	FLJ23129 Chr:1p31.3
5	31	228100_at	LOC128344 Chr:1p13.2
6	26	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	21	220302_at	MAK Chr:6q22
9	50	235946_at	FLJ32783 Chr:Xp11.23
10	30	227091_at	KIAA1505 Chr:7p12.3
11	41	231077_at	MGC20470 Chr:11p15.4
12	22	220390_at	FLJ23598 Chr:11p11.2
13	23	220591_s_at	FLJ22843 Chr:xp11.4
14	11	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	51	236222_at	AAT1 Chr:3q12-q13.3
17	46	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	15	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	66	243087_at	NYD-SP29 Chr:1p22.3
21	12	205714_s_at	ZMYND10 Chr:3p21.3
22	48	233516_s_at	PF6 Chr:1p12
23	63	240857_at	DNAH9 Chr:17p12
24	54	236909_at	LOC129881 Chr:2q31.1
25	45	231549_at	MGC35194 Chr:1p36.21
26	53	236717_at	LOC165186 Chr:2p23.3
27	62	240065_at	FLJ25333 Chr:5q15
28	56	237281_at	AKAP28 Chr:xq25
29	42	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	34	229169_at	TTC18 Chr:10q22.3
32	67	243802_at	FLJ40427 Chr:3p21.2
33	19	220168_at	CASC1 Chr:12p12.1
34	61	239916_at	LOC146845 Chr:17p13.1
35	24	220636_at	DNAI2 Chr:17q25
36	64	241310_at	--- ---
37	55	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	57	238116_at	DNCL2B Chr:16q23.3
39	60	239776_at	--- Chr:5q22.1
40	38	230093_at	TSGA2 Chr:21q22.3
41	20	220269_at	FLJ23049 Chr:3q26.2
42	13	206197_at	NME5 Chr:5q31
43	52	236325_at	--- ---
44	33	229012_at	C9orf24 Chr:9p13.2
45	27	224463_s_at	MGC13040 Chr:11q22.2
46	58	238327_at	ECGF1 Chr:22q13.33
47	65	241470_x_at	--- ---
48	49	235658_at	--- ---
49	8	202587_s_at	AK1 Chr:9q34.1
50	35	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	17	218876_at	CGI-38 Chr:16q22.1
53	25	222890_at	HSPC065 Chr:16q13
54	18	219703_at	MNS1 Chr:15q21.2
55	28	226872_at	RFX2 Chr:19p13.3-p13.2
56	68	64900_at	CHST5 Chr:16q22.3
57	47	232984_at	HYDIN Chr:16q22.2
58	29	227081_at	DNALI1 Chr:1p35.1
59	43	231319_x_at	KIF9 Chr:3p21.31
60	16	210117_at	SPAG1 Chr:8q22.2
61	9	203397_s_at	GALNT3 Chr:2q24-q31
62	59	238584_at	FLJ22527 Chr:2q37.3
63	32	228450_at	LOC144100 Chr:11p15.2-p15.1
64	40	231068_at	FLJ31196 Chr:17p11.2
65	14	207624_s_at	RPGR Chr:xp11.4
66	36	229331_at	LOC132671 Chr:4q12
67	44	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:13:17

S3_using_G5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC