S3_using_G4

Super-paramagnetic Clustering of 4 points in a 60 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1076.cel
2	2	148.cel
3	3	1553.cel
4	4	1780.cel

Genes Names

1	34	218469_at	GREM1 Chr:15q13-q15
2	27	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	25	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	30	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	26	211836_s_at	MOG Chr:6p22-p21.3
6	44	228624_at	FLJ11155 Chr:4q32.1
7	13	204733_at	KLK6 Chr:19q13.3
8	36	219750_at	FLJ11155 Chr:4q32.1
9	32	217613_at	FLJ11155 Chr:4q32.1
10	33	218094_s_at	C20orf35 Chr:20q13.12
11	17	205989_s_at	MOG Chr:6p22-p21.3
12	41	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	42	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	37	220026_at	CLCA4 Chr:1p31-p22
17	19	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	21	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	29	213371_at	LDB3 Chr:10q22.3-q23.2
22	24	210657_s_at	PNUTL2 Chr:17q22-q23
23	23	210193_at	MOBP Chr:3p21.33
24	28	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	54	238498_at	--- ---
27	31	214650_x_at	MOG Chr:6p22-p21.3
28	14	204777_s_at	MAL Chr:2cen-q13
29	46	229781_at	--- ---
30	45	228891_at	LOC349236 Chr:9q22.2
31	60	242765_at	MOBP Chr:3p21.33
32	22	210169_at	KIAA0420 Chr:16p13.3
33	47	231911_at	KIAA1189 Chr:2q24.2
34	20	207659_s_at	MOBP Chr:3p21.33
35	57	241717_at	LOC285281 Chr:3p21.33
36	53	238008_at	MGC35308 Chr:6q27
37	40	223572_at	KIAA1173 Chr:3p21.33
38	48	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	51	235794_at	MOBP Chr:3p21.33
41	38	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	59	242002_at	TCBA1 Chr:6q21
45	11	204547_at	RAB40B Chr:17q25.3
46	39	222862_s_at	AK5 Chr:1p31
47	49	235342_at	SPOCK3 Chr:4q32.3
48	16	205814_at	GRM3 Chr:7q21.1-q21.2
49	52	236420_s_at	TMEM16D Chr:12q23.3
50	55	239575_at	TMEM10 Chr:10q23-q24
51	58	241833_at	--- ---
52	15	205637_s_at	SH3GL3 Chr:15q24
53	56	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	12	204681_s_at	RAPGEF5 Chr:7p15.3
57	35	219429_at	FA2H Chr:16q23
58	43	227006_at	PPP1R14A Chr:19q13.1
59	50	235476_at	TSBF1 Chr:3q26.1
60	18	207308_at	SLCO1A2 Chr:12p12

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:10:38

S3_using_G4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC