S3_using_G28

Super-paramagnetic Clustering of 4 points in a 20 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1				1076.cel
2	2				148.cel
3	3				1553.cel
4	4				1780.cel

Genes Names

1	2	204121_at		GADD45G Chr:9q22.1-q22.2
2	14	229400_at		HOXD10 Chr:2q31.1
3	18	238847_at		--- ---
4	5	206858_s_at		HOXC6 Chr:12q13.3
5	6	209905_at		HOXA9 Chr:7p15-p14
6	9	214651_s_at		HOXA9 Chr:7p15-p14
7	3	204362_at		SCAP2 Chr:7p21-p15
8	10	225639_at		SCAP2 Chr:7p21-p15
9	8	213844_at		HOXA5 Chr:7p15-p14
10	7	213150_at		HOXA10 Chr:7p15-p14
11	11	226582_at		--- Chr:12q13.13
12	1	1557051_s_at		--- ---
13	13	228642_at		--- ---
14	16	235521_at		HOXA3 Chr:7p15-p14
15	17	235753_at		--- ---
16	19	239153_at		--- Chr:12q13.13
17	12	228564_at		LOC375295 Chr:2q31.2
18	4	205522_at		HOXD4 Chr:2q31.1
19	15	231906_at		HOXD8 Chr:2q31.1
20	20	244521_at		--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 16:06:53