S3_using_G26

Super-paramagnetic Clustering of 4 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1076.cel
2	2	148.cel
3	3	1553.cel
4	4	1780.cel

Genes Names

1	29	204825_at	MELK Chr:9p13.1
2	21	204162_at	KNTC2 Chr:18p11.31
3	5	202503_s_at	KIAA0101 Chr:15q22.1
4	43	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	52	218039_at	NUSAP1 Chr:15q14
7	70	222848_at	FKSG14 Chr:5p15.2-q12.3
8	55	218662_s_at	HCAP-G Chr:4p16-p15
9	15	203755_at	BUB1B Chr:15q15
10	49	214710_s_at	CCNB1 Chr:5q12
11	18	204026_s_at	ZWINT Chr:10q21-q22
12	10	203213_at	CDC2 Chr:10q21.1
13	24	204244_s_at	ASK Chr:7q21.3
14	39	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	44	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	8	202705_at	CCNB2 Chr:15q21.3
19	57	218755_at	KIF20A Chr:5q31
20	11	203358_s_at	EZH2 Chr:7q35-q36
21	16	203764_at	DLG7 Chr:14q22.2
22	60	219148_at	TOPK Chr:8p21.2
23	9	202870_s_at	CDC20 Chr:1p34.1
24	80	228273_at	FLJ11029 Chr:17q23.2
25	56	218663_at	HCAP-G Chr:4p16-p15
26	62	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	82	228729_at	CCNB1 Chr:5q12
28	13	203554_x_at	PTTG1 Chr:5q35.1
29	20	204146_at	PIR51 Chr:12p13.2-p13.1
30	53	218355_at	KIF4A Chr:xq13.1
31	30	204962_s_at	CENPA Chr:2p24-p21
32	59	218883_s_at	KLIP1 Chr:4q35.1
33	51	218009_s_at	PRC1 Chr:15q26.1
34	45	210559_s_at	CDC2 Chr:10q21.1
35	38	207828_s_at	CENPF Chr:1q32-q41
36	42	209642_at	BUB1 Chr:2q14
37	68	222740_at	ATAD2 Chr:8q24.13
38	72	223381_at	CDCA1 Chr:1q23.2
39	61	219306_at	KNSL7 Chr:3p21.32
40	47	213226_at	PMSCL1 Chr:4q27
41	63	219918_s_at	ASPM Chr:1q31
42	86	230165_at	SGOL2 Chr:2q33.2
43	25	204444_at	KIF11 Chr:10q24.1
44	32	205046_at	CENPE Chr:4q24-q25
45	12	203362_s_at	MAD2L1 Chr:4q27
46	46	213007_at	FLJ10719 Chr:15q25-q26
47	89	236641_at	KIF14 Chr:1pter-q31.3
48	28	204822_at	TTK Chr:6q13-q21
49	41	209172_s_at	CENPF Chr:1q32-q41
50	81	228323_at	AF15Q14 Chr:15q14
51	76	226980_at	XTP1 Chr:5q12.1
52	66	222077_s_at	RACGAP1 Chr:12q13.12
53	54	218585_s_at	RAMP Chr:1q32.1-q32.2
54	67	222680_s_at	RAMP Chr:1q32.1-q32.2
55	27	204641_at	NEK2 Chr:1q32.2-q41
56	90	238756_at	LOC283431 Chr:12q23.3
57	73	224428_s_at	CDCA7 Chr:2q31
58	7	202589_at	TYMS Chr:18p11.32
59	71	223229_at	HSPC150 Chr:1q32.1
60	6	202580_x_at	FOXM1 Chr:12p13
61	22	204170_s_at	CKS2 Chr:9q22
62	58	218875_s_at	FBXO5 Chr:6q25-q26
63	65	222039_at	LOC146909 Chr:17q21.31
64	74	225834_at	MGC57827 ---
65	77	227249_at	NDE1 Chr:16p13.11
66	91	242560_at	FANCD2 Chr:3p26
67	35	206102_at	KIAA0186 Chr:20p11.21
68	19	204033_at	TRIP13 Chr:5p15.33
69	40	208808_s_at	HMGB2 Chr:4q31
70	79	228033_at	E2F7 Chr:12q21.1
71	37	207165_at	HMMR Chr:5q33.2-qter
72	84	229490_s_at	IQGAP3 Chr:1q23.1
73	88	235425_at	SGOL2 Chr:2q33.2
74	50	216237_s_at	MCM5 Chr:22q13.1
75	14	203560_at	GGH Chr:8q12.2
76	23	204240_s_at	SMC2L1 Chr:9q31.2
77	36	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	64	220239_at	KLHL7 Chr:7p15.3
79	48	213906_at	MYBL1 Chr:8q22
80	26	204510_at	CDC7 Chr:1p22
81	78	227350_at	--- ---
82	34	205967_at	HIST1H4C Chr:6p21.3
83	33	205394_at	CHEK1 Chr:11q24-q24
84	83	229305_at	KLIP1 Chr:4q35.1
85	4	202107_s_at	MCM2 Chr:3q21
86	17	204023_at	RFC4 Chr:3q27
87	69	222843_at	FIGNL1 Chr:7p12.2
88	31	205034_at	CCNE2 Chr:8q22.1
89	85	229551_x_at	ZNF367 Chr:9q22
90	87	232315_at	LOC400713 Chr:19q13.41
91	75	226319_s_at	THOC4 Chr:17q25.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 16:02:05

S3_using_G26

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC