S3_using_G19

Super-paramagnetic Clustering of 4 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1076.cel
2	4	1780.cel
3	2	148.cel
4	3	1553.cel

Genes Names

1	38	218469_at	GREM1 Chr:15q13-q15
2	28	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	26	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	33	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	27	211836_s_at	MOG Chr:6p22-p21.3
6	56	228624_at	FLJ11155 Chr:4q32.1
7	14	204733_at	KLK6 Chr:19q13.3
8	42	219750_at	FLJ11155 Chr:4q32.1
9	36	217613_at	FLJ11155 Chr:4q32.1
10	37	218094_s_at	C20orf35 Chr:20q13.12
11	18	205989_s_at	MOG Chr:6p22-p21.3
12	47	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	50	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	43	220026_at	CLCA4 Chr:1p31-p22
17	20	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	22	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	31	213371_at	LDB3 Chr:10q22.3-q23.2
22	25	210657_s_at	PNUTL2 Chr:17q22-q23
23	24	210193_at	MOBP Chr:3p21.33
24	30	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	70	238498_at	--- ---
27	34	214650_x_at	MOG Chr:6p22-p21.3
28	15	204777_s_at	MAL Chr:2cen-q13
29	58	229781_at	--- ---
30	57	228891_at	LOC349236 Chr:9q22.2
31	78	242765_at	MOBP Chr:3p21.33
32	23	210169_at	KIAA0420 Chr:16p13.3
33	60	231911_at	KIAA1189 Chr:2q24.2
34	21	207659_s_at	MOBP Chr:3p21.33
35	74	241717_at	LOC285281 Chr:3p21.33
36	69	238008_at	MGC35308 Chr:6q27
37	46	223572_at	KIAA1173 Chr:3p21.33
38	61	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	66	235794_at	MOBP Chr:3p21.33
41	44	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	77	242002_at	TCBA1 Chr:6q21
45	12	204547_at	RAB40B Chr:17q25.3
46	45	222862_s_at	AK5 Chr:1p31
47	64	235342_at	SPOCK3 Chr:4q32.3
48	17	205814_at	GRM3 Chr:7q21.1-q21.2
49	67	236420_s_at	TMEM16D Chr:12q23.3
50	71	239575_at	TMEM10 Chr:10q23-q24
51	75	241833_at	--- ---
52	16	205637_s_at	SH3GL3 Chr:15q24
53	72	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	13	204681_s_at	RAPGEF5 Chr:7p15.3
57	41	219429_at	FA2H Chr:16q23
58	52	227006_at	PPP1R14A Chr:19q13.1
59	65	235476_at	TSBF1 Chr:3q26.1
60	19	207308_at	SLCO1A2 Chr:12p12
61	29	212750_at	PPP1R16B Chr:20q12
62	40	219305_x_at	FBXO2 Chr:1p36.21
63	80	41577_at	PPP1R16B Chr:20q12
64	79	244113_at	--- ---
65	35	214769_at	CLCN4 Chr:Xp22.3
66	39	218651_s_at	FLJ11196 Chr:15q22.32
67	48	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	76	241873_at	UNC5C Chr:4q21-q23
69	51	226018_at	Ells1 Chr:7p15.1
70	54	227440_at	EB-1 Chr:12q23.1-q23.2
71	59	230104_s_at	p25 Chr:5p15.3
72	73	240292_x_at	EB-1 Chr:12q23.1-q23.2
73	53	227439_at	EB-1 Chr:12q23.1-q23.2
74	55	227441_s_at	EB-1 Chr:12q23.1-q23.2
75	62	234261_at	--- ---
76	68	236838_at	--- ---
77	11	204467_s_at	SNCA Chr:4q21
78	49	225727_at	PLEKHH1 Chr:14q24.1
79	63	235236_at	--- ---
80	32	213839_at	KIAA0500 Chr:14q32.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:45:53

S3_using_G19

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC