S3_using_G18

Super-paramagnetic Clustering of 4 points in a 25 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1				1076.cel
2	2				148.cel
3	3				1553.cel
4	4				1780.cel

Genes Names

1	6	205741_s_at		DTNA Chr:18q12
2	8	207443_at		NR2E1 Chr:6q21
3	18	217678_at		SLC7A11 Chr:4q28-q32
4	11	209921_at		SLC7A11 Chr:4q28-q32
5	5	205363_at		BBOX1 Chr:11p14.2
6	3	204041_at		MAOB Chr:xp11.23
7	10	209301_at		CA2 Chr:8q22
8	12	210066_s_at		AQP4 Chr:18q11.2-q12.1
9	13	210067_at		AQP4 Chr:18q11.2-q12.1
10	2	203723_at		ITPKB Chr:1q42.13
11	4	204363_at		F3 Chr:1p22-p21
12	7	206022_at		NDP Chr:xp11.4
13	14	210068_s_at		AQP4 Chr:18q11.2-q12.1
14	15	210906_x_at		AQP4 Chr:18q11.2-q12.1
15	1	202800_at		SLC1A3 Chr:5p13
16	16	213395_at		MLC1 Chr:22q13.33
17	17	213618_at		CENTD1 Chr:4p15.1
18	9	207455_at		P2RY1 Chr:3q25.2
19	23	231925_at		--- ---
20	25	238003_at		FLJ25530 Chr:11q24.2
21	19	223605_at		SLC25A18 Chr:22q11.2
22	21	226228_at		AQP4 Chr:18q11.2-q12.1
23	20	226189_at		--- ---
24	22	227084_at		DTNA Chr:18q12
25	24	235795_at		PAX6 Chr:11p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:43:25