S3_using_G17

Super-paramagnetic Clustering of 4 points in a 141 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1076.cel
2	2	148.cel
3	3	1553.cel
4	4	1780.cel

Genes Names

1	22	204337_at	RGS4 Chr:1q23.2
2	23	204339_s_at	RGS4 Chr:1q23.2
3	16	203798_s_at	VSNL1 Chr:2p24.3
4	93	228262_at	FLJ14503 Chr:xp22.13
5	40	206376_at	SLC6A15 Chr:12q21.3
6	91	227702_at	CYP4X1 Chr:1p33
7	41	206456_at	GABRA5 Chr:15q11.2-q12
8	139	243929_at	--- ---
9	72	219937_at	TRHDE Chr:12q15-q21
10	63	214945_at	NY-REN-7 Chr:5q35.3
11	8	1556366_s_at	FLJ33708 Chr:6p24.3
12	69	219425_at	SULT4A1 Chr:22q13.2-q13.31
13	3	1553864_at	DKFZp761H2121 Chr:10q26.13
14	43	206678_at	GABRA1 Chr:5q34-q35
15	113	233002_at	KIAA1622 Chr:14q32.2
16	101	230137_at	FLJ30834 Chr:4q27
17	73	220030_at	STYK1 Chr:12p13.31
18	44	206780_at	GAD2 Chr:10p11.23
19	7	1556351_at	HCN1 Chr:5p12
20	5	1556095_at	UNC13C Chr:15q21.1
21	19	204081_at	NRGN Chr:11q24
22	56	213921_at	SST Chr:3q28
23	32	205113_at	NEF3 Chr:8p21
24	21	204229_at	SLC17A7 Chr:19q13
25	135	242404_at	--- ---
26	1	1552714_at	CREG2 Chr:2q12.1
27	108	231489_x_at	--- ---
28	37	205827_at	CCK Chr:3p22-p21.3
29	140	244118_at	GABRA1 Chr:5q34-q35
30	2	1553422_s_at	A2BP1 Chr:16p13.3
31	9	1557122_s_at	--- ---
32	81	224650_at	MAL2 Chr:8q23
33	18	203999_at	SYT1 Chr:12cen-q21
34	50	210247_at	SYN2 Chr:3p25
35	112	232426_at	--- ---
36	141	52837_at	KIAA1644 Chr:22q13
37	74	220359_s_at	ARPP-21 Chr:3p22.1
38	75	221217_s_at	A2BP1 Chr:16p13.3
39	17	203998_s_at	SYT1 Chr:12cen-q21
40	49	210227_at	DLGAP2 Chr:8p23
41	6	1556096_s_at	UNC13C Chr:15q21.1
42	105	230551_at	--- ---
43	120	237384_x_at	--- ---
44	119	236456_at	PTPN5 Chr:11p15.1
45	132	241807_x_at	--- ---
46	35	205635_at	HAPIP Chr:3q21.2
47	57	214044_at	RYR2 Chr:1q42.1-q43
48	11	1568612_at	GABRG2 Chr:5q31.1-q33.1
49	95	229039_at	SYN2 Chr:3p25
50	25	204546_at	KIAA0513 Chr:16q24.1
51	14	202507_s_at	SNAP25 Chr:20p12-p11.2
52	71	219671_at	HPCAL4 Chr:1p34.2
53	84	226086_at	SYT13 Chr:11p12-p11
54	34	205414_s_at	KIAA0672 Chr:17p12
55	70	219659_at	ATP8A2 Chr:13q12-13
56	48	210040_at	SLC12A5 Chr:20q13.12
57	130	241399_at	TAFA2 Chr:12q13.3-q14.1
58	83	225111_s_at	NAPB Chr:20p12.3-p11.21
59	127	239765_at	--- ---
60	86	227053_at	PACSIN1 Chr:6p21.3
61	64	214956_at	--- ---
62	123	239357_at	--- ---
63	58	214098_at	KIAA1107 Chr:1p22.1
64	62	214811_at	KIAA0318 Chr:12q24.33
65	80	224209_s_at	GDA Chr:9q21.11-21.33
66	36	205691_at	SYNGR3 Chr:16p13
67	46	209726_at	CA11 Chr:19q13.3
68	124	239579_at	ABHD7 Chr:1p22.1
69	79	224164_at	TPM3 Chr:1q21.2
70	96	229254_at	DKFZp761N1114 Chr:1q32.1
71	131	241672_at	LOC400120 Chr:13q13.2
72	65	215241_at	TMEM16C Chr:11p14.3
73	13	202260_s_at	STXBP1 Chr:9q34.1
74	39	206196_s_at	RPIP8 Chr:17q21.31
75	77	223529_at	SYT4 Chr:18q12.3
76	27	204722_at	SCN3B Chr:11q24.1
77	60	214230_at	CDC42 Chr:1p36.1
78	115	235066_at	MAP4 Chr:3p21
79	78	223654_s_at	BRUNOL4 Chr:18q12
80	122	238966_at	BRUNOL4 Chr:18q12
81	47	210016_at	MYT1L Chr:2p25.3
82	98	229300_at	--- ---
83	138	243666_at	BRUNOL4 Chr:18q12
84	15	202712_s_at	CKMT1 Chr:15q15
85	28	204723_at	SCN3B Chr:11q24.1
86	103	230262_at	--- ---
87	136	242999_at	ARHGEF7 Chr:13q34
88	45	209556_at	NCDN Chr:1p34.3
89	85	226382_at	LOC283070 Chr:10p14
90	10	1559545_at	--- ---
91	67	218623_at	HMP19 Chr:5q35.2
92	100	230076_at	FLJ10156 Chr:17p13.2
93	121	238786_at	--- ---
94	55	213904_at	--- ---
95	68	219308_s_at	AK5 Chr:1p31
96	106	230698_at	--- ---
97	128	239767_at	--- ---
98	20	204134_at	PDE2A Chr:11q13.3
99	4	1555958_at	CRTAC1 Chr:10q22
100	24	204465_s_at	INA Chr:10q24.33
101	38	206013_s_at	ACTL6 Chr:7q22
102	30	204869_at	PCSK2 Chr:20p11.2
103	61	214376_at	--- ---
104	110	232305_at	HMGCLL1 Chr:6p12.1
105	118	236448_at	UNC5A Chr:5q35.3
106	102	230255_at	GABRD Chr:1p36.3
107	129	241382_at	--- ---
108	59	214111_at	OPCML Chr:11q25
109	26	204697_s_at	CHGA Chr:14q32
110	76	223500_at	CPLX1 Chr:4p16.3
111	87	227226_at	C6orf117 Chr:6q15
112	97	229294_at	JPH3 Chr:16q24.3
113	107	230932_at	--- ---
114	104	230497_at	BRUNOL5 Chr:19p13
115	133	242193_at	--- Chr:8q12.3
116	125	239671_at	--- ---
117	31	204953_at	SNAP91 Chr:6q15
118	88	227240_at	NGEF Chr:2q37
119	90	227690_at	GABRB3 Chr:15q11.2-q12
120	99	229724_at	GABRB3 Chr:15q11.2-q12
121	111	232411_at	--- ---
122	116	235230_at	--- ---
123	114	233139_at	--- ---
124	117	236166_at	LOC285147 Chr:2p25.2
125	12	202073_at	OPTN Chr:10p14
126	33	205257_s_at	AMPH Chr:7p14-p13
127	54	213307_at	SHANK2 Chr:11q13.2
128	29	204763_s_at	GNAO1 Chr:16q13
129	89	227641_at	MGC33974 Chr:16p13.3
130	51	210721_s_at	PAK7 Chr:20p12
131	92	227830_at	GABRB3 Chr:15q11.2-q12
132	109	231986_at	RIMS1 Chr:6q12-q13
133	137	243163_at	--- ---
134	52	212473_s_at	MICAL2 Chr:11p15.3
135	42	206552_s_at	TAC1 Chr:7q21-q22
136	94	229029_at	--- ---
137	53	213280_at	GARNL4 Chr:17p13.3
138	66	216086_at	SV2C Chr:5q13.3
139	82	224801_at	NDFIP2 Chr:13q22.2
140	126	239678_at	--- ---
141	134	242344_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:41:28

S3_using_G17

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC