S3_using_G15

Super-paramagnetic Clustering of 4 points in a 108 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	2	148.cel
2	1	1076.cel
3	3	1553.cel
4	4	1780.cel

Genes Names

1	77	218854_at	SART2 Chr:6q22
2	24	203561_at	FCGR2A Chr:1q23
3	72	217388_s_at	KYNU Chr:2q22.3
4	13	201743_at	CD14 Chr:5q31.1
5	54	211429_s_at	--- ---
6	10	201422_at	IFI30 Chr:19p13.1
7	43	206584_at	LY96 Chr:8q13.3
8	38	204971_at	CSTA Chr:3q21
9	79	219607_s_at	MS4A4A Chr:11q12
10	14	202546_at	VAMP8 Chr:2p12-p11.2
11	86	223280_x_at	MS4A6A Chr:11q12.1
12	89	224356_x_at	MS4A6A Chr:11q12.1
13	16	202833_s_at	SERPINA1 Chr:14q32.1
14	30	204174_at	ALOX5AP Chr:13q12
15	104	230550_at	MS4A6A Chr:11q12.1
16	78	219386_s_at	SLAMF8 Chr:1q23.1
17	11	201487_at	CTSC Chr:11q14.1-q14.3
18	80	219666_at	MS4A6A Chr:11q12.1
19	31	204232_at	FCER1G Chr:1q23
20	51	210176_at	TLR1 Chr:4p14
21	67	214770_at	MSR1 Chr:8p22
22	6	1554899_s_at	FCER1G Chr:1q23
23	15	202803_s_at	ITGB2 Chr:21q22.3
24	8	1555728_a_at	MS4A4A Chr:11q12
25	19	202953_at	C1QB Chr:1p36.3-p34.1
26	76	218232_at	C1QA Chr:1p36.3-p34.1
27	64	213566_at	RNASE6 Chr:14q11.2
28	90	225353_s_at	C1QG Chr:1p36.11
29	60	212588_at	PTPRC Chr:1q31-q32
30	7	1555349_a_at	ITGB2 Chr:21q22.3
31	37	204959_at	MNDA Chr:1q22
32	27	204007_at	FCGR3A Chr:1q23
33	12	201721_s_at	LAPTM5 Chr:1p34
34	35	204787_at	Z39IG Chr:xq12-q13.3
35	28	204122_at	TYROBP Chr:19q13.1
36	17	202901_x_at	CTSS Chr:1q21
37	41	206111_at	RNASE2 Chr:14q24-q31
38	98	228532_at	MGC24133 Chr:1p13.2
39	65	214467_at	GPR65 Chr:14q31-q32.1
40	26	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	45	208018_s_at	HCK Chr:20q11-q12
43	106	232617_at	CTSS Chr:1q21
44	20	202957_at	HCLS1 Chr:3q13
45	18	202902_s_at	CTSS Chr:1q21
46	33	204446_s_at	ALOX5 Chr:10q11.2
47	99	229560_at	TLR8 Chr:xp22
48	39	205786_s_at	ITGAM Chr:16p11.2
49	82	220330_s_at	SAMSN1 Chr:21q11
50	96	227266_s_at	FYB Chr:5p13.1
51	85	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	23	203416_at	CD53 Chr:1p13
53	101	229937_x_at	LILRB1 Chr:19q13.4
54	71	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	52	210314_x_at	TNFSF13 Chr:17p13.1
56	5	1552807_a_at	SIGLEC10 Chr:19q13.3
57	94	226068_at	SYK Chr:9q22
58	91	225502_at	DOCK8 Chr:9p24.3
59	75	217983_s_at	RNASET2 Chr:6q27
60	21	203104_at	CSF1R Chr:5q33-q35
61	107	232843_s_at	DOCK8 Chr:9p24.3
62	66	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	97	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	73	217478_s_at	HLA-DMA Chr:6p21.3
65	48	209312_x_at	HLA-DRB1 Chr:6p21.3
66	53	210982_s_at	HLA-DRA Chr:6p21.3
67	69	215193_x_at	HLA-DRB3 Chr:6p21.3
68	46	208306_x_at	HLA-DRB3 Chr:6p21.3
69	47	208894_at	HLA-DRA Chr:6p21.3
70	34	204670_x_at	HLA-DRB3 Chr:6p21.3
71	49	209619_at	CD74 Chr:5q32
72	62	212998_x_at	HLA-DQB1 Chr:6p21.3
73	55	211654_x_at	HLA-DQB1 Chr:6p21.3
74	59	211991_s_at	HLA-DPA1 Chr:6p21.3
75	87	223343_at	MS4A7 Chr:11q12
76	9	201137_s_at	HLA-DPB1 Chr:6p21.3
77	56	211656_x_at	HLA-DQB1 Chr:6p21.3
78	50	209823_x_at	HLA-DQB1 Chr:6p21.3
79	4	1552386_at	FLJ33641 Chr:5q12.1
80	63	213537_at	HLA-DPA1 Chr:6p21.3
81	61	212671_s_at	HLA-DQA1 Chr:6p21.3
82	95	227265_at	--- ---
83	58	211990_at	HLA-DPA1 Chr:6p21.3
84	103	230391_at	--- ---
85	81	220146_at	TLR7 Chr:xp22.3
86	40	205997_at	ADAM28 Chr:8p21.2
87	88	223620_at	GPR34 Chr:xp11.4-p11.3
88	57	211742_s_at	EVI2B Chr:17q11.2
89	100	229723_at	TAGAP Chr:6q25.3
90	29	204150_at	STAB1 Chr:3p21.31
91	108	38487_at	STAB1 Chr:3p21.31
92	102	230252_at	GPR92 Chr:12p13.31
93	42	206420_at	IGSF6 Chr:16p12-p13
94	105	230925_at	APBB1IP Chr:10p12.2
95	25	203645_s_at	CD163 Chr:12p13.3
96	68	215049_x_at	CD163 Chr:12p13.3
97	84	221210_s_at	NPL Chr:1q25
98	22	203305_at	F13A1 Chr:6p25.3-p24.3
99	92	225646_at	CTSC Chr:11q14.1-q14.3
100	93	225647_s_at	CTSC Chr:11q14.1-q14.3
101	2	1552365_at	SCIN Chr:7p21.3
102	32	204430_s_at	SLC2A5 Chr:1p36.2
103	44	207655_s_at	BLNK Chr:10q23.2-q23.33
104	70	216233_at	CD163 Chr:12p13.3
105	3	1552367_a_at	SCIN Chr:7p21.3
106	36	204834_at	FGL2 Chr:7q11.23
107	74	217767_at	C3 Chr:19p13.3-p13.2
108	83	220532_s_at	LR8 Chr:7q36.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 15:36:17

S3_using_G15

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC