S3_using_G11

Super-paramagnetic Clustering of 4 points in a 15 dimensional space.

Each point is a row.

Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

    • PCA of points

     

    K Mutual Nearest Neighbors (K=1)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples
    11 1076.cel
    23 1553.cel
    32 148.cel
    44 1780.cel

    Genes Names
    18206915_atNKX2-2 Chr:20pter-q11.23
    22201416_atSOX4 Chr:6p22.3
    33201417_atSOX4 Chr:6p22.3
    411569316_at--- ---
    54204913_s_atSOX11 Chr:2p25
    65204914_s_atSOX11 Chr:2p25
    76204915_s_atSOX11 Chr:2p25
    814229700_atLOC148203 Chr:19p13.11
    97205347_s_atTMSNB Chr:xq21.33-q22.3
    1012228144_atZNF300 Chr:5q33.1
    119213668_s_atSOX4 Chr:6p22.3
    1211227921_at--- ---
    1310220898_at--- ---
    1415232668_at--- ---
    1513228790_atMGC39325 Chr:8q12.1

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data

    Parameters for SPC

    K (nearest neighbors)1
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1
    Created by SPC_HTML_REPORT on 12-Aug-2004 15:27:29