S2_using_G8

Super-paramagnetic Clustering of 4 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Genes Names

1	66	218854_at	SART2 Chr:6q22
2	21	203561_at	FCGR2A Chr:1q23
3	62	217388_s_at	KYNU Chr:2q22.3
4	11	201743_at	CD14 Chr:5q31.1
5	46	211429_s_at	--- ---
6	8	201422_at	IFI30 Chr:19p13.1
7	36	206584_at	LY96 Chr:8q13.3
8	32	204971_at	CSTA Chr:3q21
9	68	219607_s_at	MS4A4A Chr:11q12
10	12	202546_at	VAMP8 Chr:2p12-p11.2
11	73	223280_x_at	MS4A6A Chr:11q12.1
12	76	224356_x_at	MS4A6A Chr:11q12.1
13	14	202833_s_at	SERPINA1 Chr:14q32.1
14	26	204174_at	ALOX5AP Chr:13q12
15	88	230550_at	MS4A6A Chr:11q12.1
16	67	219386_s_at	SLAMF8 Chr:1q23.1
17	9	201487_at	CTSC Chr:11q14.1-q14.3
18	69	219666_at	MS4A6A Chr:11q12.1
19	27	204232_at	FCER1G Chr:1q23
20	43	210176_at	TLR1 Chr:4p14
21	59	214770_at	MSR1 Chr:8p22
22	4	1554899_s_at	FCER1G Chr:1q23
23	13	202803_s_at	ITGB2 Chr:21q22.3
24	6	1555728_a_at	MS4A4A Chr:11q12
25	17	202953_at	C1QB Chr:1p36.3-p34.1
26	65	218232_at	C1QA Chr:1p36.3-p34.1
27	56	213566_at	RNASE6 Chr:14q11.2
28	77	225353_s_at	C1QG Chr:1p36.11
29	52	212588_at	PTPRC Chr:1q31-q32
30	5	1555349_a_at	ITGB2 Chr:21q22.3
31	31	204959_at	MNDA Chr:1q22
32	23	204007_at	FCGR3A Chr:1q23
33	10	201721_s_at	LAPTM5 Chr:1p34
34	30	204787_at	Z39IG Chr:xq12-q13.3
35	24	204122_at	TYROBP Chr:19q13.1
36	15	202901_x_at	CTSS Chr:1q21
37	35	206111_at	RNASE2 Chr:14q24-q31
38	83	228532_at	MGC24133 Chr:1p13.2
39	57	214467_at	GPR65 Chr:14q31-q32.1
40	22	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	37	208018_s_at	HCK Chr:20q11-q12
43	89	232617_at	CTSS Chr:1q21
44	18	202957_at	HCLS1 Chr:3q13
45	16	202902_s_at	CTSS Chr:1q21
46	28	204446_s_at	ALOX5 Chr:10q11.2
47	84	229560_at	TLR8 Chr:xp22
48	33	205786_s_at	ITGAM Chr:16p11.2
49	71	220330_s_at	SAMSN1 Chr:21q11
50	81	227266_s_at	FYB Chr:5p13.1
51	72	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	20	203416_at	CD53 Chr:1p13
53	86	229937_x_at	LILRB1 Chr:19q13.4
54	61	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	44	210314_x_at	TNFSF13 Chr:17p13.1
56	3	1552807_a_at	SIGLEC10 Chr:19q13.3
57	79	226068_at	SYK Chr:9q22
58	78	225502_at	DOCK8 Chr:9p24.3
59	64	217983_s_at	RNASET2 Chr:6q27
60	19	203104_at	CSF1R Chr:5q33-q35
61	90	232843_s_at	DOCK8 Chr:9p24.3
62	58	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	82	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	63	217478_s_at	HLA-DMA Chr:6p21.3
65	40	209312_x_at	HLA-DRB1 Chr:6p21.3
66	45	210982_s_at	HLA-DRA Chr:6p21.3
67	60	215193_x_at	HLA-DRB3 Chr:6p21.3
68	38	208306_x_at	HLA-DRB3 Chr:6p21.3
69	39	208894_at	HLA-DRA Chr:6p21.3
70	29	204670_x_at	HLA-DRB3 Chr:6p21.3
71	41	209619_at	CD74 Chr:5q32
72	54	212998_x_at	HLA-DQB1 Chr:6p21.3
73	47	211654_x_at	HLA-DQB1 Chr:6p21.3
74	51	211991_s_at	HLA-DPA1 Chr:6p21.3
75	74	223343_at	MS4A7 Chr:11q12
76	7	201137_s_at	HLA-DPB1 Chr:6p21.3
77	48	211656_x_at	HLA-DQB1 Chr:6p21.3
78	42	209823_x_at	HLA-DQB1 Chr:6p21.3
79	2	1552386_at	FLJ33641 Chr:5q12.1
80	55	213537_at	HLA-DPA1 Chr:6p21.3
81	53	212671_s_at	HLA-DQA1 Chr:6p21.3
82	80	227265_at	--- ---
83	50	211990_at	HLA-DPA1 Chr:6p21.3
84	87	230391_at	--- ---
85	70	220146_at	TLR7 Chr:xp22.3
86	34	205997_at	ADAM28 Chr:8p21.2
87	75	223620_at	GPR34 Chr:xp11.4-p11.3
88	49	211742_s_at	EVI2B Chr:17q11.2
89	85	229723_at	TAGAP Chr:6q25.3
90	25	204150_at	STAB1 Chr:3p21.31
91	91	38487_at	STAB1 Chr:3p21.31

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 13:12:23

S2_using_G8

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC