S2_using_G3

Super-paramagnetic Clustering of 4 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Genes Names

1	11	203798_s_at	VSNL1 Chr:2p24.3
2	50	228262_at	FLJ14503 Chr:xp22.13
3	22	206376_at	SLC6A15 Chr:12q21.3
4	49	227702_at	CYP4X1 Chr:1p33
5	23	206456_at	GABRA5 Chr:15q11.2-q12
6	67	243929_at	--- ---
7	39	219937_at	TRHDE Chr:12q15-q21
8	34	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	36	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	24	206678_at	GABRA1 Chr:5q34-q35
13	57	233002_at	KIAA1622 Chr:14q32.2
14	53	230137_at	FLJ30834 Chr:4q27
15	40	220030_at	STYK1 Chr:12p13.31
16	25	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	14	204081_at	NRGN Chr:11q24
20	30	213921_at	SST Chr:3q28
21	17	205113_at	NEF3 Chr:8p21
22	15	204229_at	SLC17A7 Chr:19q13
23	66	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	55	231489_x_at	--- ---
26	21	205827_at	CCK Chr:3p22-p21.3
27	68	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	45	224650_at	MAL2 Chr:8q23
31	13	203999_at	SYT1 Chr:12cen-q21
32	29	210247_at	SYN2 Chr:3p25
33	56	232426_at	--- ---
34	69	52837_at	KIAA1644 Chr:22q13
35	41	220359_s_at	ARPP-21 Chr:3p22.1
36	42	221217_s_at	A2BP1 Chr:16p13.3
37	12	203998_s_at	SYT1 Chr:12cen-q21
38	28	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	54	230551_at	--- ---
41	59	237384_x_at	--- ---
42	58	236456_at	PTPN5 Chr:11p15.1
43	65	241807_x_at	--- ---
44	19	205635_at	HAPIP Chr:3q21.2
45	31	214044_at	RYR2 Chr:1q42.1-q43
46	9	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	51	229039_at	SYN2 Chr:3p25
48	16	204546_at	KIAA0513 Chr:16q24.1
49	10	202507_s_at	SNAP25 Chr:20p12-p11.2
50	38	219671_at	HPCAL4 Chr:1p34.2
51	47	226086_at	SYT13 Chr:11p12-p11
52	18	205414_s_at	KIAA0672 Chr:17p12
53	37	219659_at	ATP8A2 Chr:13q12-13
54	27	210040_at	SLC12A5 Chr:20q13.12
55	63	241399_at	TAFA2 Chr:12q13.3-q14.1
56	46	225111_s_at	NAPB Chr:20p12.3-p11.21
57	62	239765_at	--- ---
58	48	227053_at	PACSIN1 Chr:6p21.3
59	35	214956_at	--- ---
60	60	239357_at	--- ---
61	32	214098_at	KIAA1107 Chr:1p22.1
62	33	214811_at	KIAA0318 Chr:12q24.33
63	44	224209_s_at	GDA Chr:9q21.11-21.33
64	20	205691_at	SYNGR3 Chr:16p13
65	26	209726_at	CA11 Chr:19q13.3
66	61	239579_at	ABHD7 Chr:1p22.1
67	43	224164_at	TPM3 Chr:1q21.2
68	52	229254_at	DKFZp761N1114 Chr:1q32.1
69	64	241672_at	LOC400120 Chr:13q13.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 12:59:00

S2_using_G3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC