S2_using_G24

Super-paramagnetic Clustering of 4 points in a 134 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Genes Names

1	93	218854_at	SART2 Chr:6q22
2	28	203561_at	FCGR2A Chr:1q23
3	88	217388_s_at	KYNU Chr:2q22.3
4	14	201743_at	CD14 Chr:5q31.1
5	69	211429_s_at	--- ---
6	10	201422_at	IFI30 Chr:19p13.1
7	56	206584_at	LY96 Chr:8q13.3
8	46	204971_at	CSTA Chr:3q21
9	95	219607_s_at	MS4A4A Chr:11q12
10	15	202546_at	VAMP8 Chr:2p12-p11.2
11	106	223280_x_at	MS4A6A Chr:11q12.1
12	110	224356_x_at	MS4A6A Chr:11q12.1
13	17	202833_s_at	SERPINA1 Chr:14q32.1
14	35	204174_at	ALOX5AP Chr:13q12
15	127	230550_at	MS4A6A Chr:11q12.1
16	94	219386_s_at	SLAMF8 Chr:1q23.1
17	11	201487_at	CTSC Chr:11q14.1-q14.3
18	96	219666_at	MS4A6A Chr:11q12.1
19	36	204232_at	FCER1G Chr:1q23
20	66	210176_at	TLR1 Chr:4p14
21	83	214770_at	MSR1 Chr:8p22
22	6	1554899_s_at	FCER1G Chr:1q23
23	16	202803_s_at	ITGB2 Chr:21q22.3
24	8	1555728_a_at	MS4A4A Chr:11q12
25	21	202953_at	C1QB Chr:1p36.3-p34.1
26	92	218232_at	C1QA Chr:1p36.3-p34.1
27	80	213566_at	RNASE6 Chr:14q11.2
28	111	225353_s_at	C1QG Chr:1p36.11
29	76	212588_at	PTPRC Chr:1q31-q32
30	7	1555349_a_at	ITGB2 Chr:21q22.3
31	45	204959_at	MNDA Chr:1q22
32	32	204007_at	FCGR3A Chr:1q23
33	13	201721_s_at	LAPTM5 Chr:1p34
34	43	204787_at	Z39IG Chr:xq12-q13.3
35	33	204122_at	TYROBP Chr:19q13.1
36	18	202901_x_at	CTSS Chr:1q21
37	54	206111_at	RNASE2 Chr:14q24-q31
38	120	228532_at	MGC24133 Chr:1p13.2
39	81	214467_at	GPR65 Chr:14q31-q32.1
40	31	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	58	208018_s_at	HCK Chr:20q11-q12
43	129	232617_at	CTSS Chr:1q21
44	22	202957_at	HCLS1 Chr:3q13
45	19	202902_s_at	CTSS Chr:1q21
46	40	204446_s_at	ALOX5 Chr:10q11.2
47	122	229560_at	TLR8 Chr:xp22
48	50	205786_s_at	ITGAM Chr:16p11.2
49	100	220330_s_at	SAMSN1 Chr:21q11
50	117	227266_s_at	FYB Chr:5p13.1
51	105	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	26	203416_at	CD53 Chr:1p13
53	124	229937_x_at	LILRB1 Chr:19q13.4
54	87	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	67	210314_x_at	TNFSF13 Chr:17p13.1
56	5	1552807_a_at	SIGLEC10 Chr:19q13.3
57	115	226068_at	SYK Chr:9q22
58	112	225502_at	DOCK8 Chr:9p24.3
59	91	217983_s_at	RNASET2 Chr:6q27
60	23	203104_at	CSF1R Chr:5q33-q35
61	130	232843_s_at	DOCK8 Chr:9p24.3
62	82	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	118	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	89	217478_s_at	HLA-DMA Chr:6p21.3
65	63	209312_x_at	HLA-DRB1 Chr:6p21.3
66	68	210982_s_at	HLA-DRA Chr:6p21.3
67	85	215193_x_at	HLA-DRB3 Chr:6p21.3
68	60	208306_x_at	HLA-DRB3 Chr:6p21.3
69	61	208894_at	HLA-DRA Chr:6p21.3
70	42	204670_x_at	HLA-DRB3 Chr:6p21.3
71	64	209619_at	CD74 Chr:5q32
72	78	212998_x_at	HLA-DQB1 Chr:6p21.3
73	70	211654_x_at	HLA-DQB1 Chr:6p21.3
74	74	211991_s_at	HLA-DPA1 Chr:6p21.3
75	107	223343_at	MS4A7 Chr:11q12
76	9	201137_s_at	HLA-DPB1 Chr:6p21.3
77	71	211656_x_at	HLA-DQB1 Chr:6p21.3
78	65	209823_x_at	HLA-DQB1 Chr:6p21.3
79	4	1552386_at	FLJ33641 Chr:5q12.1
80	79	213537_at	HLA-DPA1 Chr:6p21.3
81	77	212671_s_at	HLA-DQA1 Chr:6p21.3
82	116	227265_at	--- ---
83	73	211990_at	HLA-DPA1 Chr:6p21.3
84	126	230391_at	--- ---
85	99	220146_at	TLR7 Chr:xp22.3
86	53	205997_at	ADAM28 Chr:8p21.2
87	108	223620_at	GPR34 Chr:xp11.4-p11.3
88	72	211742_s_at	EVI2B Chr:17q11.2
89	123	229723_at	TAGAP Chr:6q25.3
90	34	204150_at	STAB1 Chr:3p21.31
91	134	38487_at	STAB1 Chr:3p21.31
92	125	230252_at	GPR92 Chr:12p13.31
93	55	206420_at	IGSF6 Chr:16p12-p13
94	128	230925_at	APBB1IP Chr:10p12.2
95	29	203645_s_at	CD163 Chr:12p13.3
96	84	215049_x_at	CD163 Chr:12p13.3
97	103	221210_s_at	NPL Chr:1q25
98	25	203305_at	F13A1 Chr:6p25.3-p24.3
99	113	225646_at	CTSC Chr:11q14.1-q14.3
100	114	225647_s_at	CTSC Chr:11q14.1-q14.3
101	2	1552365_at	SCIN Chr:7p21.3
102	38	204430_s_at	SLC2A5 Chr:1p36.2
103	57	207655_s_at	BLNK Chr:10q23.2-q23.33
104	86	216233_at	CD163 Chr:12p13.3
105	3	1552367_a_at	SCIN Chr:7p21.3
106	44	204834_at	FGL2 Chr:7q11.23
107	90	217767_at	C3 Chr:19p13.3-p13.2
108	102	220532_s_at	LR8 Chr:7q36.1
109	20	202917_s_at	S100A8 Chr:1q21
110	27	203535_at	S100A9 Chr:1q21
111	101	220491_at	HAMP Chr:19q13.1
112	48	205119_s_at	FPR1 Chr:19q13.4
113	109	223660_at	AD026 Chr:1p13.2
114	75	212543_at	AIM1 Chr:6q21
115	98	220005_at	GPR86 Chr:3q24
116	52	205898_at	CX3CR1 Chr:3p21.3
117	119	227889_at	CAPNS2 Chr:16q13
118	37	204416_x_at	APOC1 Chr:19q13.2
119	51	205890_s_at	UBD Chr:6p21.3
120	59	208146_s_at	CPVL Chr:7p15-p14
121	30	203665_at	HMOX1 Chr:22q13.1
122	132	236028_at	IBSP Chr:4q21-q25
123	133	244434_at	--- ---
124	41	204563_at	SELL Chr:1q23-q25
125	39	204438_at	MRC1 Chr:10p13
126	97	219890_at	CLECSF5 Chr:7q33
127	131	234987_at	--- Chr:20q11.23
128	47	205027_s_at	MAP3K8 Chr:10p12.1
129	62	208944_at	TGFBR2 Chr:3p22
130	12	201631_s_at	IER3 Chr:6p21.3
131	49	205681_at	BCL2A1 Chr:15q24.3
132	24	203290_at	HLA-DQA1 Chr:6p21.3
133	104	221491_x_at	HLA-DRB3 Chr:6p21.3
134	121	229074_at	EHD4 Chr:15q11.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 13:51:14

S2_using_G24

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC