S2_using_G21

Super-paramagnetic Clustering of 4 points in a 213 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1357.cel
2	4	55.cel
3	2	1795R.cel
4	3	1869RR.cel

Genes Names

1	13	1557961_s_at	--- ---
2	33	204513_s_at	ELMO1 Chr:7p14.1
3	4	1554007_at	--- ---
4	60	206382_s_at	BDNF Chr:11p13
5	55	206051_at	ELAVL4 Chr:1p34
6	187	238073_at	ELAVL4 Chr:1p34
7	23	203911_at	RAP1GA1 Chr:1p36.1-p35
8	40	204726_at	CDH13 Chr:16q24.2-q24.3
9	41	204730_at	RIMS3 Chr:1pter-p22.2
10	7	1556047_s_at	KIAA1587 Chr:xq13.2
11	20	203159_at	GLS Chr:2q32-q34
12	49	205551_at	SV2B Chr:15q26.1
13	21	203797_at	VSNL1 Chr:2p24.3
14	35	204584_at	L1CAM Chr:xq28
15	36	204675_at	SRD5A1 Chr:5p15
16	30	204337_at	RGS4 Chr:1q23.2
17	31	204339_s_at	RGS4 Chr:1q23.2
18	22	203798_s_at	VSNL1 Chr:2p24.3
19	141	228262_at	FLJ14503 Chr:xp22.13
20	59	206376_at	SLC6A15 Chr:12q21.3
21	137	227702_at	CYP4X1 Chr:1p33
22	61	206456_at	GABRA5 Chr:15q11.2-q12
23	210	243929_at	--- ---
24	111	219937_at	TRHDE Chr:12q15-q21
25	98	214945_at	NY-REN-7 Chr:5q35.3
26	11	1556366_s_at	FLJ33708 Chr:6p24.3
27	108	219425_at	SULT4A1 Chr:22q13.2-q13.31
28	3	1553864_at	DKFZp761H2121 Chr:10q26.13
29	63	206678_at	GABRA1 Chr:5q34-q35
30	172	233002_at	KIAA1622 Chr:14q32.2
31	153	230137_at	FLJ30834 Chr:4q27
32	112	220030_at	STYK1 Chr:12p13.31
33	64	206780_at	GAD2 Chr:10p11.23
34	10	1556351_at	HCN1 Chr:5p12
35	8	1556095_at	UNC13C Chr:15q21.1
36	26	204081_at	NRGN Chr:11q24
37	85	213921_at	SST Chr:3q28
38	46	205113_at	NEF3 Chr:8p21
39	28	204229_at	SLC17A7 Chr:19q13
40	205	242404_at	--- ---
41	1	1552714_at	CREG2 Chr:2q12.1
42	165	231489_x_at	--- ---
43	53	205827_at	CCK Chr:3p22-p21.3
44	211	244118_at	GABRA1 Chr:5q34-q35
45	2	1553422_s_at	A2BP1 Chr:16p13.3
46	12	1557122_s_at	--- ---
47	124	224650_at	MAL2 Chr:8q23
48	25	203999_at	SYT1 Chr:12cen-q21
49	73	210247_at	SYN2 Chr:3p25
50	171	232426_at	--- ---
51	213	52837_at	KIAA1644 Chr:22q13
52	113	220359_s_at	ARPP-21 Chr:3p22.1
53	114	221217_s_at	A2BP1 Chr:16p13.3
54	24	203998_s_at	SYT1 Chr:12cen-q21
55	72	210227_at	DLGAP2 Chr:8p23
56	9	1556096_s_at	UNC13C Chr:15q21.1
57	159	230551_at	--- ---
58	185	237384_x_at	--- ---
59	183	236456_at	PTPN5 Chr:11p15.1
60	202	241807_x_at	--- ---
61	50	205635_at	HAPIP Chr:3q21.2
62	87	214044_at	RYR2 Chr:1q42.1-q43
63	15	1568612_at	GABRG2 Chr:5q31.1-q33.1
64	144	229039_at	SYN2 Chr:3p25
65	34	204546_at	KIAA0513 Chr:16q24.1
66	18	202507_s_at	SNAP25 Chr:20p12-p11.2
67	110	219671_at	HPCAL4 Chr:1p34.2
68	128	226086_at	SYT13 Chr:11p12-p11
69	48	205414_s_at	KIAA0672 Chr:17p12
70	109	219659_at	ATP8A2 Chr:13q12-13
71	71	210040_at	SLC12A5 Chr:20q13.12
72	200	241399_at	TAFA2 Chr:12q13.3-q14.1
73	126	225111_s_at	NAPB Chr:20p12.3-p11.21
74	197	239765_at	--- ---
75	131	227053_at	PACSIN1 Chr:6p21.3
76	99	214956_at	--- ---
77	193	239357_at	--- ---
78	89	214098_at	KIAA1107 Chr:1p22.1
79	96	214811_at	KIAA0318 Chr:12q24.33
80	123	224209_s_at	GDA Chr:9q21.11-21.33
81	51	205691_at	SYNGR3 Chr:16p13
82	68	209726_at	CA11 Chr:19q13.3
83	194	239579_at	ABHD7 Chr:1p22.1
84	122	224164_at	TPM3 Chr:1q21.2
85	147	229254_at	DKFZp761N1114 Chr:1q32.1
86	201	241672_at	LOC400120 Chr:13q13.2
87	101	215241_at	TMEM16C Chr:11p14.3
88	17	202260_s_at	STXBP1 Chr:9q34.1
89	57	206196_s_at	RPIP8 Chr:17q21.31
90	120	223529_at	SYT4 Chr:18q12.3
91	38	204722_at	SCN3B Chr:11q24.1
92	92	214230_at	CDC42 Chr:1p36.1
93	176	235066_at	MAP4 Chr:3p21
94	121	223654_s_at	BRUNOL4 Chr:18q12
95	191	238966_at	BRUNOL4 Chr:18q12
96	70	210016_at	MYT1L Chr:2p25.3
97	149	229300_at	--- ---
98	208	243666_at	BRUNOL4 Chr:18q12
99	19	202712_s_at	CKMT1 Chr:15q15
100	39	204723_at	SCN3B Chr:11q24.1
101	156	230262_at	--- ---
102	206	242999_at	ARHGEF7 Chr:13q34
103	65	209556_at	NCDN Chr:1p34.3
104	129	226382_at	LOC283070 Chr:10p14
105	14	1559545_at	--- ---
106	104	218623_at	HMP19 Chr:5q35.2
107	152	230076_at	FLJ10156 Chr:17p13.2
108	190	238786_at	--- ---
109	84	213904_at	--- ---
110	106	219308_s_at	AK5 Chr:1p31
111	161	230698_at	--- ---
112	198	239767_at	--- ---
113	27	204134_at	PDE2A Chr:11q13.3
114	6	1555958_at	CRTAC1 Chr:10q22
115	32	204465_s_at	INA Chr:10q24.33
116	54	206013_s_at	ACTL6 Chr:7q22
117	44	204869_at	PCSK2 Chr:20p11.2
118	93	214376_at	--- ---
119	169	232305_at	HMGCLL1 Chr:6p12.1
120	182	236448_at	UNC5A Chr:5q35.3
121	155	230255_at	GABRD Chr:1p36.3
122	199	241382_at	--- ---
123	90	214111_at	OPCML Chr:11q25
124	37	204697_s_at	CHGA Chr:14q32
125	119	223500_at	CPLX1 Chr:4p16.3
126	132	227226_at	C6orf117 Chr:6q15
127	148	229294_at	JPH3 Chr:16q24.3
128	162	230932_at	--- ---
129	158	230497_at	BRUNOL5 Chr:19p13
130	203	242193_at	--- Chr:8q12.3
131	195	239671_at	--- ---
132	45	204953_at	SNAP91 Chr:6q15
133	133	227240_at	NGEF Chr:2q37
134	136	227690_at	GABRB3 Chr:15q11.2-q12
135	150	229724_at	GABRB3 Chr:15q11.2-q12
136	170	232411_at	--- ---
137	178	235230_at	--- ---
138	173	233139_at	--- ---
139	181	236166_at	LOC285147 Chr:2p25.2
140	16	202073_at	OPTN Chr:10p14
141	47	205257_s_at	AMPH Chr:7p14-p13
142	81	213307_at	SHANK2 Chr:11q13.2
143	43	204763_s_at	GNAO1 Chr:16q13
144	135	227641_at	MGC33974 Chr:16p13.3
145	74	210721_s_at	PAK7 Chr:20p12
146	139	227830_at	GABRB3 Chr:15q11.2-q12
147	168	231986_at	RIMS1 Chr:6q12-q13
148	207	243163_at	--- ---
149	75	212473_s_at	MICAL2 Chr:11p15.3
150	62	206552_s_at	TAC1 Chr:7q21-q22
151	143	229029_at	--- ---
152	80	213280_at	GARNL4 Chr:17p13.3
153	103	216086_at	SV2C Chr:5q13.3
154	125	224801_at	NDFIP2 Chr:13q22.2
155	196	239678_at	--- ---
156	204	242344_at	--- ---
157	76	213040_s_at	NPTXR Chr:22q13.1
158	82	213308_at	SHANK2 Chr:11q13.2
159	157	230287_at	RUTBC2 Chr:22q11.23
160	209	243681_at	SHANK2 Chr:11q13.2
161	177	235227_at	--- ---
162	52	205818_at	DBC1 Chr:9q32-q33
163	86	213938_at	CAST Chr:3p21.31
164	97	214874_at	PKP4 Chr:2q23-q31
165	94	214607_at	PAK3 Chr:xq22.3-q23
166	146	229201_at	--- ---
167	77	213122_at	TSPYL5 Chr:8q22.1
168	100	215116_s_at	DNM1 Chr:9q34
169	107	219368_at	NAP1L2 Chr:xq13
170	142	228414_at	LOC142955 Chr:10q22.3
171	58	206290_s_at	RGS7 Chr:1q43
172	145	229057_at	--- ---
173	29	204260_at	CHGB Chr:20pter-p12
174	151	229823_at	--- ---
175	167	231935_at	ARPP-21 Chr:3p22.1
176	42	204743_at	NP25 Chr:3q13.13-q13.2
177	66	209583_s_at	MOX2 Chr:3q12-q13
178	91	214157_at	GNAS Chr:20q13.2-q13.3
179	118	223362_s_at	38233 Chr:22q13.2
180	140	228194_s_at	SORCS1 Chr:10q23-q25
181	95	214762_at	ATP6V1G2 Chr:6p21.3
182	179	235486_at	MGC34830 Chr:11p13
183	188	238673_at	--- ---
184	164	231325_at	UNC5D Chr:8p12-p11.23
185	184	236656_s_at	--- ---
186	5	1555370_a_at	CAMTA1 Chr:1p36.23
187	79	213268_at	CAMTA1 Chr:1p36.23
188	105	218720_x_at	PSK-1 Chr:16p12.1
189	166	231771_at	GJB6 Chr:13q12
190	212	244680_at	GLRB Chr:4q31.3
191	67	209683_at	DKFZP566A1524 Chr:2p24.3
192	78	213172_at	TTC9 Chr:14q24.1
193	83	213386_at	--- ---
194	130	226864_at	PKIA Chr:8q21.11
195	154	230238_at	LOC134548 Chr:5q31.1
196	163	231166_at	GPR155 Chr:2q31.1
197	189	238727_at	--- ---
198	69	209982_s_at	NRXN2 Chr:11q13
199	102	215307_at	--- ---
200	138	227817_at	PRKCB1 Chr:16p11.2
201	115	221792_at	--- ---
202	192	239293_at	VMP Chr:6p22.1
203	88	214046_at	--- ---
204	56	206084_at	PTPRR Chr:12q15
205	116	221801_x_at	NEFL Chr:8p21
206	174	233499_at	KIAA1365 Chr:1p31.2
207	160	230692_at	LOC157503 Chr:8q11.23
208	186	237802_at	KIAA1889 Chr:8q11.23
209	117	223340_at	SPG3A Chr:14q22.1
210	127	225792_at	--- ---
211	134	227365_at	ATCAY Chr:19p13.3
212	175	234303_s_at	GPR85 Chr:7q31
213	180	236024_at	GPM6A Chr:4q34

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 13:44:20

S2_using_G21

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC