S2_using_G16

Super-paramagnetic Clustering of 4 points in a 49 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Genes Names

1	15	209291_at	ID4 Chr:6p22-p21
2	16	209292_at	ID4 Chr:6p22-p21
3	41	226933_s_at	ID4 Chr:6p22-p21
4	5	203632_s_at	GPRC5B Chr:16p12
5	14	209170_s_at	GPM6B Chr:xp22.2
6	19	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
7	11	209167_at	GPM6B Chr:Xp22.2
8	12	209168_at	GPM6B Chr:xp22.2
9	3	203540_at	GFAP Chr:17q21
10	13	209169_at	GPM6B Chr:xp22.2
11	23	209686_at	S100B Chr:21q22.3
12	34	218087_s_at	SORBS1 Chr:10q23.3-q24.1
13	35	218899_s_at	BAALC Chr:8q22.3
14	36	222780_s_at	BAALC Chr:8q22.3
15	4	203562_at	FEZ1 Chr:11q24.2
16	47	231898_x_at	SOX2OT Chr:3q26.3-q27
17	32	216033_s_at	FYN Chr:6q21
18	28	212486_s_at	FYN Chr:6q21
19	8	205433_at	BCHE Chr:3q26.1-q26.2
20	6	204469_at	PTPRZ1 Chr:7q31.3
21	10	206826_at	PMP2 Chr:8q21.3-q22.1
22	48	235127_at	PMP2 Chr:8q21.3-q22.1
23	9	205475_at	SCRG1 Chr:4q31-q32
24	24	209859_at	TRIM9 Chr:14q22.1
25	25	211596_s_at	LRIG1 Chr:3p14
26	27	212070_at	GPR56 Chr:16q13
27	31	214023_x_at	MGC8685 Chr:6p25
28	49	44783_s_at	HEY1 Chr:8q21
29	26	212062_at	ATP9A Chr:20q13.11-q13.2
30	30	213849_s_at	PPP2R2B Chr:5q31-5q32
31	20	209598_at	PNMA2 Chr:8p21.1
32	39	225491_at	SLC1A2 Chr:11p13-p12
33	40	226627_at	38238 Chr:5q31
34	1	1555471_a_at	FMN2 Chr:1q43
35	38	223618_at	FMN2 Chr:1q43
36	2	202986_at	ARNT2 Chr:15q24
37	21	209617_s_at	CTNND2 Chr:5p15.2
38	22	209618_at	CTNND2 Chr:5p15.2
39	18	209470_s_at	GPM6A Chr:4q34
40	43	228546_at	DPP6 Chr:7q36.2-q36.3
41	17	209469_at	GPM6A Chr:4q34
42	46	229053_at	LOC51760 Chr:16p13.11
43	42	228375_at	IGSF11 Chr:3q13.33
44	44	228581_at	KCNJ10 Chr:1q22-q23
45	45	228780_at	POU3F3 Chr:2q12.1
46	37	222803_at	PRTFDC1 Chr:10p12.31
47	7	204471_at	GAP43 Chr:3q13.1-q13.2
48	33	216963_s_at	GAP43 Chr:3q13.1-q13.2
49	29	213721_at	SOX2 Chr:3q26.3-q27

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 13:33:10

S2_using_G16

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC