S2_using_G14

Super-paramagnetic Clustering of 4 points in a 26 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=2)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1				1357.cel
2	3				1869RR.cel
3	2				1795R.cel
4	4				55.cel

Genes Names

1	1	203180_at		ALDH1A3 Chr:15q26.3
2	2	203434_s_at		MME Chr:3q25.1-q25.2
3	6	205619_s_at		MEOX1 Chr:17q21
4	21	231766_s_at		COL12A1 Chr:6q12-q13
5	5	205431_s_at		BMP5 Chr:6p12.1
6	3	204776_at		THBS4 Chr:5q13
7	4	205430_at		BMP5 Chr:6p12.1
8	7	205713_s_at		COMP Chr:19p13.1
9	24	236035_at		--- ---
10	8	205848_at		GAS2 Chr:11p14.3-p15.2
11	12	218499_at		MST4 Chr:xq26.2
12	23	235944_at		FIBL-6 Chr:1q25.3
13	9	212414_s_at		38236 Chr:xq25
14	10	213456_at		SOSTDC1 Chr:7p21.2
15	25	239468_at		C10orf48 Chr:10p12.1
16	26	244885_at		EBF2 Chr:8p21.2
17	14	220014_at		LOC51334 Chr:5q23.2
18	15	220065_at		TNMD Chr:xq21.33-q23
19	16	226834_at		ASAM Chr:11q24.1
20	22	232090_at		--- ---
21	13	219837_s_at		C17 Chr:4p16-p15
22	17	226930_at		FNDC1 Chr:6q25
23	18	227070_at		LOC83468 Chr:12q
24	11	217525_at		UNQ564 Chr:11p15.4
25	19	227850_x_at		CDC42EP5 Chr:19q13.42
26	20	229839_at		MGC45780 Chr:8p21.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	2
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 13:27:34