S1_using_G9

Super-paramagnetic Clustering of 84 points in a 32 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	28	S93	1780.cel
2	4	S93	1076.cel
3	18	S93	148.cel
4	21	S93	1553.cel
5	15	S93	1437.cel
6	5		12.cel
7	65		547.cel
8	34		212R.cel
9	30		1854R.cel
10	39	S92 S96 S103 S105 S106	246.cel
11	67	S92 S96 S103 S105 S106	558.cel
12	84	S92 S96 S103 S105 S106	ge205.cel
13	24	S92 S96 S103 S105 S106	159.cel
14	68	S92 S96 S103 S105 S106	563.cel
15	50	S92 S96 S103 S105 S106	344.cel
16	8	S96 S103 S105 S106	1297.cel
17	58	S103 S105 S106	444.cel
18	62	S103 S105 S106	527.cel
19	37	S105 S106	236.cel
20	11	S91 S94 S100 S105 S106	1357.cel
21	43	S91 S94 S100 S105 S106	283.cel
22	51	S91 S94 S100 S105 S106	345.cel
23	32	S91 S94 S100 S105 S106	190.cel
24	38	S94 S100 S105 S106	242.cel
25	20	S94 S100 S105 S106	15.cel
26	76	S100 S105 S106	80.cel
27	9	S90 S101 S105 S106	1308.cel
28	12	S90 S101 S105 S106	1360.cel
29	45	S90 S101 S105 S106	288.cel
30	47	S90 S101 S105 S106	300.cel
31	80	S90 S101 S105 S106	93.cel
32	64	S90 S101 S105 S106	534.cel
33	31	S90 S101 S105 S106	1869RR.cel
34	52	S90 S101 S105 S106	349.cel
35	40	S90 S101 S105 S106	254.cel
36	63	S101 S105 S106	528bis.cel
37	75	S101 S105 S106	70.cel
38	29	S99 S101 S105 S106	1795R.cel
39	44	S99 S101 S105 S106	284.cel
40	55	S99 S101 S105 S106	390.cel
41	33	S99 S101 S105 S106	211.cel
42	59	S99 S101 S105 S106	458.cel
43	23	S99 S101 S105 S106	157.cel
44	81	S99 S101 S105 S106	94bis.cel
45	53	S105 S106	356bis.cel
46	27	S98 S105 S106	1622R.cel
47	13	S98 S105 S106	1399.cel
48	66	S98 S105 S106	55.cel
49	77	S98 S105 S106	83.cel
50	79	S106	90.cel
51	10	S106	1317.cel
52	42	S106	274.cel
53	14	S106	1430.cel
54	19	S106	1497R.cel
55	1	S106	100R.cel
56	7	S95 S106	129.cel
57	49	S95 S106	328.cel
58	2	S95 S106	104.cel
59	41	S95 S106	269.cel
60	46	S95 S106	30.cel
61	73	S95 S106	63.cel
62	61	S106	506.cel
63	25	S106	161.cel
64	17	S104	147.cel
65	35	S104	218.cel
66	26	S104	1621.cel
67	54	S104	360.cel
68	74	S107	65R.cel
69	22	S107	155R.cel
70	69	S107	566.cel
71	83	S107	ge197.cel
72	6	S89 S97 S102 S108	1284.cel
73	36	S89 S97 S102 S108	222.cel
74	56	S89 S97 S102 S108	396.cel
75	57	S89 S97 S102 S108	428.cel
76	16	S97 S102 S108	1453.cel
77	60	S97 S102 S108	461.cel
78	70	S97 S102 S108	57.cel
79	72	S97 S102 S108	57R.cel
80	3	S97 S102 S108	106.cel
81	78	S97 S102 S108	84.cel
82	48	S102 S108	323.cel
83	71	S108	574.cel
84	82	S108	97.cel

Genes Names

1	3	200632_s_at	NDRG1 Chr:8q24.3
2	6	202497_x_at	SLC2A3 Chr:12p13.3
3	11	203108_at	RAI3 Chr:12p13-p12.3
4	7	202627_s_at	SERPINE1 Chr:7q21.3-q22
5	8	202859_x_at	IL8 Chr:4q13-q21
6	13	203438_at	STC2 Chr:5q35.2
7	9	202912_at	ADM Chr:11p15.4
8	10	202934_at	HK2 Chr:2p13
9	19	212171_x_at	VEGF Chr:6p12
10	5	201169_s_at	BHLHB2 Chr:3p26
11	2	1554452_a_at	HIG2 Chr:7q32.2
12	30	226452_at	PDK1 Chr:2q31.1
13	1	1553392_at	FLJ25818 Chr:17q24.1
14	16	210512_s_at	VEGF Chr:6p12
15	18	211527_x_at	VEGF Chr:6p12
16	28	222646_s_at	ERO1L Chr:14q22.1
17	4	200737_at	PGK1 Chr:xq13
18	23	218507_at	HIG2 Chr:7q32.2
19	26	221009_s_at	ANGPTL4 Chr:19p13.3
20	12	203282_at	GBE1 Chr:3p12.3
21	17	210513_s_at	VEGF Chr:6p12
22	14	204298_s_at	LOX Chr:5q23.2
23	21	215446_s_at	--- ---
24	27	221123_x_at	ZNF395 Chr:8p21.1
25	29	223216_x_at	ZNF395 Chr:8p21.1
26	22	218149_s_at	ZNF395 Chr:8p21.1
27	31	232693_s_at	ZNF395 Chr:8p21.1
28	20	212775_at	KIAA0657 Chr:2q36.1
29	15	209122_at	ADFP Chr:9p22.1-p21.3
30	25	219434_at	TREM1 Chr:6p21.1
31	32	242517_at	GPR54 Chr:19p13.3
32	24	219410_at	FLJ10134 Chr:3q12.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 08:06:08

S1_using_G9

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC