S1_using_G8

Super-paramagnetic Clustering of 84 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	78	S66 S69 S84 S88	84.cel
2	40	S66 S69 S84 S88	254.cel
3	45	S66 S69 S84 S88	288.cel
4	83	S66 S69 S84 S88	ge197.cel
5	22	S69 S84 S88	155R.cel
6	37	S84 S88	236.cel
7	48	S88	323.cel
8	28	S70 S87	1780.cel
9	38	S70 S87	242.cel
10	23	S70 S87	157.cel
11	35	S70 S87	218.cel
12	66	S70 S87	55.cel
13	8	S70 S87	1297.cel
14	41	S70 S87	269.cel
15	2	S70 S87	104.cel
16	7	S83 S87	129.cel
17	82	S83 S87	97.cel
18	64	S83 S87	534.cel
19	72	S83 S87	57R.cel
20	54	S67 S68 S76 S78 S85	360.cel
21	74	S67 S68 S76 S78 S85	65R.cel
22	63	S67 S68 S76 S78 S85	528bis.cel
23	24	S67 S68 S76 S78 S85	159.cel
24	42	S67 S68 S76 S78 S85	274.cel
25	12	S68 S76 S78 S85	1360.cel
26	50	S76 S78 S85	344.cel
27	57	S78 S85	428.cel
28	75	S85	70.cel
29	32	S86	190.cel
30	43	S86	283.cel
31	76	S86	80.cel
32	21	S79 S86	1553.cel
33	20	S79 S86	15.cel
34	4	S79 S86	1076.cel
35	9	S79 S86	1308.cel
36	11	S86	1357.cel
37	51	S86	345.cel
38	6	S75 S86	1284.cel
39	70	S75 S86	57.cel
40	3	S75 S86	106.cel
41	25	S75 S86	161.cel
42	53	S75 S86	356bis.cel
43	30	S86	1854R.cel
44	69	S86	566.cel
45	10	S80 S86	1317.cel
46	16	S80 S86	1453.cel
47	13	S74 S80 S86	1399.cel
48	17	S74 S80 S86	147.cel
49	18	S74 S80 S86	148.cel
50	5	S74 S80 S86	12.cel
51	81	S74 S80 S86	94bis.cel
52	19	S86	1497R.cel
53	31	S81 S86	1869RR.cel
54	27	S81 S86	1622R.cel
55	39	S81 S86	246.cel
56	61	S81 S86	506.cel
57	46	S71 S81 S86	30.cel
58	55	S71 S81 S86	390.cel
59	15	S71 S81 S86	1437.cel
60	58	S71 S81 S86	444.cel
61	47	S81 S86	300.cel
62	67	S86	558.cel
63	34	S86	212R.cel
64	14	S73 S86	1430.cel
65	60	S73 S86	461.cel
66	26	S73 S86	1621.cel
67	65	S73 S86	547.cel
68	44	S82 S86	284.cel
69	33	S82 S86	211.cel
70	59	S82 S86	458.cel
71	71	S72 S77 S82 S86	574.cel
72	79	S72 S77 S82 S86	90.cel
73	36	S72 S77 S82 S86	222.cel
74	49	S72 S77 S82 S86	328.cel
75	77	S77 S82 S86	83.cel
76	56	S77 S82 S86	396.cel
77	68	S77 S82 S86	563.cel
78	1	S86	100R.cel
79	73	S86	63.cel
80	84	S86	ge205.cel
81	29	S86	1795R.cel
82	52	S86	349.cel
83	62	S86	527.cel
84	80	S86	93.cel

Genes Names

1	66	218854_at	SART2 Chr:6q22
2	21	203561_at	FCGR2A Chr:1q23
3	62	217388_s_at	KYNU Chr:2q22.3
4	11	201743_at	CD14 Chr:5q31.1
5	46	211429_s_at	--- ---
6	8	201422_at	IFI30 Chr:19p13.1
7	36	206584_at	LY96 Chr:8q13.3
8	32	204971_at	CSTA Chr:3q21
9	68	219607_s_at	MS4A4A Chr:11q12
10	12	202546_at	VAMP8 Chr:2p12-p11.2
11	73	223280_x_at	MS4A6A Chr:11q12.1
12	76	224356_x_at	MS4A6A Chr:11q12.1
13	14	202833_s_at	SERPINA1 Chr:14q32.1
14	26	204174_at	ALOX5AP Chr:13q12
15	88	230550_at	MS4A6A Chr:11q12.1
16	67	219386_s_at	SLAMF8 Chr:1q23.1
17	9	201487_at	CTSC Chr:11q14.1-q14.3
18	69	219666_at	MS4A6A Chr:11q12.1
19	27	204232_at	FCER1G Chr:1q23
20	43	210176_at	TLR1 Chr:4p14
21	59	214770_at	MSR1 Chr:8p22
22	4	1554899_s_at	FCER1G Chr:1q23
23	13	202803_s_at	ITGB2 Chr:21q22.3
24	6	1555728_a_at	MS4A4A Chr:11q12
25	17	202953_at	C1QB Chr:1p36.3-p34.1
26	65	218232_at	C1QA Chr:1p36.3-p34.1
27	56	213566_at	RNASE6 Chr:14q11.2
28	77	225353_s_at	C1QG Chr:1p36.11
29	52	212588_at	PTPRC Chr:1q31-q32
30	5	1555349_a_at	ITGB2 Chr:21q22.3
31	31	204959_at	MNDA Chr:1q22
32	23	204007_at	FCGR3A Chr:1q23
33	10	201721_s_at	LAPTM5 Chr:1p34
34	30	204787_at	Z39IG Chr:xq12-q13.3
35	24	204122_at	TYROBP Chr:19q13.1
36	15	202901_x_at	CTSS Chr:1q21
37	35	206111_at	RNASE2 Chr:14q24-q31
38	83	228532_at	MGC24133 Chr:1p13.2
39	57	214467_at	GPR65 Chr:14q31-q32.1
40	22	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	37	208018_s_at	HCK Chr:20q11-q12
43	89	232617_at	CTSS Chr:1q21
44	18	202957_at	HCLS1 Chr:3q13
45	16	202902_s_at	CTSS Chr:1q21
46	28	204446_s_at	ALOX5 Chr:10q11.2
47	84	229560_at	TLR8 Chr:xp22
48	33	205786_s_at	ITGAM Chr:16p11.2
49	71	220330_s_at	SAMSN1 Chr:21q11
50	81	227266_s_at	FYB Chr:5p13.1
51	72	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	20	203416_at	CD53 Chr:1p13
53	86	229937_x_at	LILRB1 Chr:19q13.4
54	61	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	44	210314_x_at	TNFSF13 Chr:17p13.1
56	3	1552807_a_at	SIGLEC10 Chr:19q13.3
57	79	226068_at	SYK Chr:9q22
58	78	225502_at	DOCK8 Chr:9p24.3
59	64	217983_s_at	RNASET2 Chr:6q27
60	19	203104_at	CSF1R Chr:5q33-q35
61	90	232843_s_at	DOCK8 Chr:9p24.3
62	58	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	82	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	63	217478_s_at	HLA-DMA Chr:6p21.3
65	40	209312_x_at	HLA-DRB1 Chr:6p21.3
66	45	210982_s_at	HLA-DRA Chr:6p21.3
67	60	215193_x_at	HLA-DRB3 Chr:6p21.3
68	38	208306_x_at	HLA-DRB3 Chr:6p21.3
69	39	208894_at	HLA-DRA Chr:6p21.3
70	29	204670_x_at	HLA-DRB3 Chr:6p21.3
71	41	209619_at	CD74 Chr:5q32
72	54	212998_x_at	HLA-DQB1 Chr:6p21.3
73	47	211654_x_at	HLA-DQB1 Chr:6p21.3
74	51	211991_s_at	HLA-DPA1 Chr:6p21.3
75	74	223343_at	MS4A7 Chr:11q12
76	7	201137_s_at	HLA-DPB1 Chr:6p21.3
77	48	211656_x_at	HLA-DQB1 Chr:6p21.3
78	42	209823_x_at	HLA-DQB1 Chr:6p21.3
79	2	1552386_at	FLJ33641 Chr:5q12.1
80	55	213537_at	HLA-DPA1 Chr:6p21.3
81	53	212671_s_at	HLA-DQA1 Chr:6p21.3
82	80	227265_at	--- ---
83	50	211990_at	HLA-DPA1 Chr:6p21.3
84	87	230391_at	--- ---
85	70	220146_at	TLR7 Chr:xp22.3
86	34	205997_at	ADAM28 Chr:8p21.2
87	75	223620_at	GPR34 Chr:xp11.4-p11.3
88	49	211742_s_at	EVI2B Chr:17q11.2
89	85	229723_at	TAGAP Chr:6q25.3
90	25	204150_at	STAB1 Chr:3p21.31
91	91	38487_at	STAB1 Chr:3p21.31

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 07:47:55

S1_using_G8

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC