S1_using_G7

Super-paramagnetic Clustering of 84 points in a 77 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18	S64	148.cel
2	21	S64	1553.cel
3	28	S64	1780.cel
4	4	S62 S64	1076.cel
5	9	S62 S64	1308.cel
6	20	S62 S64	15.cel
7	66	S62 S64	55.cel
8	29	S62 S64	1795R.cel
9	31	S62 S64	1869RR.cel
10	76	S62 S64	80.cel
11	51	S62 S64	345.cel
12	12	S61 S62 S64	1360.cel
13	15	S61 S62 S64	1437.cel
14	38	S61 S62 S64	242.cel
15	43	S61 S62 S64	283.cel
16	44	S61 S62 S64	284.cel
17	11	S62 S64	1357.cel
18	80	S62 S64	93.cel
19	2	S64	104.cel
20	73	S64	63.cel
21	1		100R.cel
22	41	S65	269.cel
23	30	S65	1854R.cel
24	26	S65	1621.cel
25	16	S65	1453.cel
26	6	S65	1284.cel
27	13	S65	1399.cel
28	42	S65	274.cel
29	17	S65	147.cel
30	50	S65	344.cel
31	5	S65	12.cel
32	56	S65	396.cel
33	25	S65	161.cel
34	58	S65	444.cel
35	19	S65	1497R.cel
36	36	S65	222.cel
37	82	S65	97.cel
38	23	S65	157.cel
39	79	S65	90.cel
40	57	S65	428.cel
41	81	S65	94bis.cel
42	65	S65	547.cel
43	54	S65	360.cel
44	69	S65	566.cel
45	70	S65	57.cel
46	3	S65	106.cel
47	10	S65	1317.cel
48	60	S65	461.cel
49	33	S65	211.cel
50	14	S65	1430.cel
51	24	S65	159.cel
52	32	S65	190.cel
53	35	S65	218.cel
54	7	S65	129.cel
55	47	S65	300.cel
56	46	S65	30.cel
57	55	S65	390.cel
58	59	S65	458.cel
59	52	S65	349.cel
60	53	S65	356bis.cel
61	77	S65	83.cel
62	71	S65	574.cel
63	49	S65	328.cel
64	61	S65	506.cel
65	62	S65	527.cel
66	27	S65	1622R.cel
67	84	S65	ge205.cel
68	48	S65	323.cel
69	75	S65	70.cel
70	45	S65	288.cel
71	63	S65	528bis.cel
72	37	S65	236.cel
73	67	S65	558.cel
74	68	S65	563.cel
75	8	S65	1297.cel
76	64	S65	534.cel
77	22	S63	155R.cel
78	39	S63	246.cel
79	74	S63	65R.cel
80	78	S63	84.cel
81	40	S63	254.cel
82	83	S63	ge197.cel
83	34		212R.cel
84	72		57R.cel

Genes Names

1	15	202404_s_at	COL1A2 Chr:7q22.1
2	1	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
3	39	211161_s_at	--- ---
4	56	215076_s_at	COL3A1 Chr:2q31
5	62	221730_at	COL5A2 Chr:2q14-q32
6	14	202403_s_at	COL1A2 Chr:7q22.1
7	5	201505_at	LAMB1 Chr:7q22
8	7	201852_x_at	COL3A1 Chr:2q31
9	61	221729_at	COL5A2 Chr:2q14-q32
10	6	201744_s_at	LUM Chr:12q21.3-q22
11	12	202310_s_at	COL1A1 Chr:17q21.3-q22.1
12	34	208690_s_at	PDLIM1 Chr:10q22-q26.3
13	26	204114_at	NID2 Chr:14q21-q22
14	16	202465_at	PCOLCE Chr:7q22
15	21	202998_s_at	LOXL2 Chr:8p21.3-p21.2
16	4	201438_at	COL6A3 Chr:2q37
17	11	202291_s_at	MGP Chr:12p13.1-p12.3
18	51	212489_at	COL5A1 Chr:9q34.2-q34.3
19	50	212488_at	COL5A1 Chr:9q34.2-q34.3
20	22	203325_s_at	COL5A1 Chr:9q34.2-q34.3
21	41	211651_s_at	LAMB1 Chr:7q22
22	13	202375_at	SEC24D Chr:4q27
23	47	212298_at	NRP1 Chr:10p12
24	68	226777_at	ADAM12 Chr:10q26.3
25	20	202952_s_at	ADAM12 Chr:10q26.3
26	54	213790_at	ADAM12 Chr:10q26.3
27	18	202766_s_at	FBN1 Chr:15q21.1
28	53	213139_at	SNAI2 Chr:8q11
29	72	229218_at	COL1A2 Chr:7q22.1
30	45	211980_at	COL4A1 Chr:13q34
31	3	200771_at	LAMC1 Chr:1q31
32	46	211981_at	COL4A1 Chr:13q34
33	65	225799_at	MGC4677 Chr:2p11.2
34	44	211966_at	COL4A2 Chr:13q34
35	30	204844_at	ENPEP Chr:4q25
36	67	226731_at	ITGA1 Chr:5q11.2
37	60	219773_at	NOX4 Chr:11q14.2-q21
38	32	205572_at	ANGPT2 Chr:8p23.1
39	59	219134_at	ELTD1 Chr:1p33-p32
40	28	204677_at	CDH5 Chr:16q22.1
41	48	212364_at	MYO1B Chr:2q12-q34
42	55	214081_at	PLXDC1 Chr:17q21.1
43	2	200700_s_at	KDELR2 Chr:7p22.2
44	38	211148_s_at	ANGPT2 Chr:8p23.1
45	43	211964_at	COL4A2 Chr:13q34
46	75	236034_at	FLJ12847 Chr:8p23.1
47	76	237261_at	FLJ12847 Chr:8p23.1
48	8	202007_at	NID Chr:1q43
49	19	202878_s_at	C1QR1 Chr:20p11.22
50	37	210495_x_at	FN1 Chr:2q34
51	57	216442_x_at	FN1 Chr:2q34
52	25	204083_s_at	TPM2 Chr:9p13.2-p13.1
53	29	204682_at	LTBP2 Chr:14q24
54	10	202202_s_at	LAMA4 Chr:6q21
55	27	204464_s_at	EDNRA Chr:4q31.22
56	33	207714_s_at	SERPINH1 Chr:11q13.5
57	42	211719_x_at	FN1 Chr:2q34
58	49	212464_s_at	FN1 Chr:2q34
59	58	218729_at	LXN Chr:3q25.32
60	64	225681_at	CTHRC1 Chr:8q22.3
61	71	228776_at	--- ---
62	66	226311_at	--- ---
63	74	232458_at	COL3A1 Chr:2q31
64	9	202112_at	VWF Chr:12p13.3
65	73	230061_at	LOC116441 Chr:3q24
66	31	205499_at	SRPUL Chr:xq21.33-q23
67	17	202709_at	FMOD Chr:1q32
68	36	209596_at	DKFZp564I1922 Chr:xp22.33
69	40	211343_s_at	COL13A1 Chr:10q22
70	69	226804_at	FAM20A Chr:17q24.3
71	77	241981_at	FAM20A Chr:17q24.3
72	24	204017_at	KDELR3 Chr:22q13.1
73	35	209156_s_at	COL6A2 Chr:21q22.3
74	63	224833_at	ETS1 Chr:11q23.3
75	23	203851_at	IGFBP6 Chr:12q13
76	52	213125_at	OLFML2B Chr:1q23.1
77	70	227628_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 07:33:04

S1_using_G7

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC