S1_using_G6

Super-paramagnetic Clustering of 84 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	39	S48	246.cel
2	45	S48	288.cel
3	66	S48	55.cel
4	20	S48	15.cel
5	48	S48	323.cel
6	31	S48	1869RR.cel
7	74	S48	65R.cel
8	28	S47	1780.cel
9	18	S47	148.cel
10	4	S47	1076.cel
11	43	S47	283.cel
12	21	S47	1553.cel
13	14		1430.cel
14	11		1357.cel
15	8		1297.cel
16	81	S53 S57	94bis.cel
17	2	S53 S57	104.cel
18	10	S53 S57	1317.cel
19	53	S53 S57	356bis.cel
20	37	S53 S57	236.cel
21	3	S53 S57	106.cel
22	17	S53 S57	147.cel
23	44	S53 S57	284.cel
24	7	S57	129.cel
25	52	S57	349.cel
26	13		1399.cel
27	84		ge205.cel
28	72	S46 S60	57R.cel
29	6	S46 S60	1284.cel
30	41	S46 S60	269.cel
31	83	S46 S60	ge197.cel
32	19	S60	1497R.cel
33	50	S56 S60	344.cel
34	24	S56 S60	159.cel
35	59	S56 S60	458.cel
36	77	S50 S56 S60	83.cel
37	79	S50 S56 S60	90.cel
38	34	S50 S56 S60	212R.cel
39	33	S50 S56 S60	211.cel
40	65	S50 S56 S60	547.cel
41	23	S50 S56 S60	157.cel
42	40		254.cel
43	67		558.cel
44	25	S45 S59	161.cel
45	73	S45 S59	63.cel
46	58	S45 S59	444.cel
47	47	S45 S59	300.cel
48	29	S45 S59	1795R.cel
49	27	S49 S54 S59	1622R.cel
50	35	S49 S54 S59	218.cel
51	42	S49 S54 S59	274.cel
52	54	S49 S54 S59	360.cel
53	70	S49 S54 S59	57.cel
54	57	S49 S54 S59	428.cel
55	61	S49 S54 S59	506.cel
56	16	S54 S59	1453.cel
57	49	S54 S59	328.cel
58	60		461.cel
59	68	S52 S58	563.cel
60	26	S52 S58	1621.cel
61	55	S52 S58	390.cel
62	75	S52 S58	70.cel
63	1	S52 S58	100R.cel
64	76	S51 S55 S58	80.cel
65	63	S51 S55 S58	528bis.cel
66	9	S51 S55 S58	1308.cel
67	32	S51 S55 S58	190.cel
68	62	S51 S55 S58	527.cel
69	36	S55 S58	222.cel
70	38	S55 S58	242.cel
71	15	S58	1437.cel
72	51	S58	345.cel
73	12		1360.cel
74	30		1854R.cel
75	46		30.cel
76	5		12.cel
77	71		574.cel
78	80		93.cel
79	56		396.cel
80	64		534.cel
81	82		97.cel
82	69		566.cel
83	22		155R.cel
84	78		84.cel

Genes Names

1	27	204825_at	MELK Chr:9p13.1
2	19	204162_at	KNTC2 Chr:18p11.31
3	4	202503_s_at	KIAA0101 Chr:15q22.1
4	40	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	49	218039_at	NUSAP1 Chr:15q14
7	66	222848_at	FKSG14 Chr:5p15.2-q12.3
8	52	218662_s_at	HCAP-G Chr:4p16-p15
9	14	203755_at	BUB1B Chr:15q15
10	46	214710_s_at	CCNB1 Chr:5q12
11	16	204026_s_at	ZWINT Chr:10q21-q22
12	9	203213_at	CDC2 Chr:10q21.1
13	22	204244_s_at	ASK Chr:7q21.3
14	36	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	41	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	7	202705_at	CCNB2 Chr:15q21.3
19	54	218755_at	KIF20A Chr:5q31
20	10	203358_s_at	EZH2 Chr:7q35-q36
21	15	203764_at	DLG7 Chr:14q22.2
22	57	219148_at	TOPK Chr:8p21.2
23	8	202870_s_at	CDC20 Chr:1p34.1
24	75	228273_at	FLJ11029 Chr:17q23.2
25	53	218663_at	HCAP-G Chr:4p16-p15
26	59	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	77	228729_at	CCNB1 Chr:5q12
28	12	203554_x_at	PTTG1 Chr:5q35.1
29	18	204146_at	PIR51 Chr:12p13.2-p13.1
30	50	218355_at	KIF4A Chr:xq13.1
31	28	204962_s_at	CENPA Chr:2p24-p21
32	56	218883_s_at	KLIP1 Chr:4q35.1
33	48	218009_s_at	PRC1 Chr:15q26.1
34	42	210559_s_at	CDC2 Chr:10q21.1
35	35	207828_s_at	CENPF Chr:1q32-q41
36	39	209642_at	BUB1 Chr:2q14
37	65	222740_at	ATAD2 Chr:8q24.13
38	68	223381_at	CDCA1 Chr:1q23.2
39	58	219306_at	KNSL7 Chr:3p21.32
40	44	213226_at	PMSCL1 Chr:4q27
41	60	219918_s_at	ASPM Chr:1q31
42	80	230165_at	SGOL2 Chr:2q33.2
43	23	204444_at	KIF11 Chr:10q24.1
44	29	205046_at	CENPE Chr:4q24-q25
45	11	203362_s_at	MAD2L1 Chr:4q27
46	43	213007_at	FLJ10719 Chr:15q25-q26
47	82	236641_at	KIF14 Chr:1pter-q31.3
48	26	204822_at	TTK Chr:6q13-q21
49	38	209172_s_at	CENPF Chr:1q32-q41
50	76	228323_at	AF15Q14 Chr:15q14
51	71	226980_at	XTP1 Chr:5q12.1
52	63	222077_s_at	RACGAP1 Chr:12q13.12
53	51	218585_s_at	RAMP Chr:1q32.1-q32.2
54	64	222680_s_at	RAMP Chr:1q32.1-q32.2
55	25	204641_at	NEK2 Chr:1q32.2-q41
56	83	238756_at	LOC283431 Chr:12q23.3
57	69	224428_s_at	CDCA7 Chr:2q31
58	6	202589_at	TYMS Chr:18p11.32
59	67	223229_at	HSPC150 Chr:1q32.1
60	5	202580_x_at	FOXM1 Chr:12p13
61	20	204170_s_at	CKS2 Chr:9q22
62	55	218875_s_at	FBXO5 Chr:6q25-q26
63	62	222039_at	LOC146909 Chr:17q21.31
64	70	225834_at	MGC57827 ---
65	72	227249_at	NDE1 Chr:16p13.11
66	84	242560_at	FANCD2 Chr:3p26
67	32	206102_at	KIAA0186 Chr:20p11.21
68	17	204033_at	TRIP13 Chr:5p15.33
69	37	208808_s_at	HMGB2 Chr:4q31
70	74	228033_at	E2F7 Chr:12q21.1
71	34	207165_at	HMMR Chr:5q33.2-qter
72	79	229490_s_at	IQGAP3 Chr:1q23.1
73	81	235425_at	SGOL2 Chr:2q33.2
74	47	216237_s_at	MCM5 Chr:22q13.1
75	13	203560_at	GGH Chr:8q12.2
76	21	204240_s_at	SMC2L1 Chr:9q31.2
77	33	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	61	220239_at	KLHL7 Chr:7p15.3
79	45	213906_at	MYBL1 Chr:8q22
80	24	204510_at	CDC7 Chr:1p22
81	73	227350_at	--- ---
82	31	205967_at	HIST1H4C Chr:6p21.3
83	30	205394_at	CHEK1 Chr:11q24-q24
84	78	229305_at	KLIP1 Chr:4q35.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	4
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 07:20:44

S1_using_G6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC