S1_using_G5

Super-paramagnetic Clustering of 84 points in a 68 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=19)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	12		1360.cel
2	2		104.cel
3	16		1453.cel
4	33		211.cel
5	25		161.cel
6	1		100R.cel
7	15		1437.cel
8	58		444.cel
9	84		ge205.cel
10	60		461.cel
11	32		190.cel
12	62		527.cel
13	37	S44	236.cel
14	45	S44	288.cel
15	67	S44	558.cel
16	74	S44	65R.cel
17	80	S44	93.cel
18	10	S43	1317.cel
19	31	S43	1869RR.cel
20	34	S43	212R.cel
21	3	S42 S43	106.cel
22	30	S42 S43	1854R.cel
23	39	S42 S43	246.cel
24	24	S42 S43	159.cel
25	11	S42 S43	1357.cel
26	13	S42 S43	1399.cel
27	7	S42 S43	129.cel
28	76	S42 S43	80.cel
29	20	S42 S43	15.cel
30	71	S42 S43	574.cel
31	4	S42 S43	1076.cel
32	28	S42 S43	1780.cel
33	29	S42 S43	1795R.cel
34	18	S42 S43	148.cel
35	21	S42 S43	1553.cel
36	22	S42 S43	155R.cel
37	38	S42 S43	242.cel
38	6	S42 S43	1284.cel
39	9	S42 S43	1308.cel
40	27	S42 S43	1622R.cel
41	35	S42 S43	218.cel
42	61	S42 S43	506.cel
43	19	S42 S43	1497R.cel
44	40	S42 S43	254.cel
45	42	S42 S43	274.cel
46	41	S42 S43	269.cel
47	46	S42 S43	30.cel
48	52	S42 S43	349.cel
49	54	S42 S43	360.cel
50	69	S42 S43	566.cel
51	78	S42 S43	84.cel
52	48	S42 S43	323.cel
53	26	S42 S43	1621.cel
54	51	S42 S43	345.cel
55	5	S42 S43	12.cel
56	14	S42 S43	1430.cel
57	23	S42 S43	157.cel
58	44	S42 S43	284.cel
59	50	S42 S43	344.cel
60	17	S42 S43	147.cel
61	36	S42 S43	222.cel
62	53	S42 S43	356bis.cel
63	79	S42 S43	90.cel
64	81	S42 S43	94bis.cel
65	8	S42 S43	1297.cel
66	64	S42 S43	534.cel
67	56	S42 S43	396.cel
68	57	S42 S43	428.cel
69	68	S42 S43	563.cel
70	65	S42 S43	547.cel
71	82	S42 S43	97.cel
72	66	S42 S43	55.cel
73	70	S42 S43	57.cel
74	77	S42 S43	83.cel
75	83	S42 S43	ge197.cel
76	59	S42 S43	458.cel
77	43	S42 S43	283.cel
78	49	S42 S43	328.cel
79	75	S42 S43	70.cel
80	63	S42 S43	528bis.cel
81	47	S43	300.cel
82	72	S43	57R.cel
83	73	S43	63.cel
84	55	S43	390.cel

Genes Names

1	10	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	39	230763_at	LOC128153 Chr:1q41
4	37	229816_at	FLJ23129 Chr:1p31.3
5	31	228100_at	LOC128344 Chr:1p13.2
6	26	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	21	220302_at	MAK Chr:6q22
9	50	235946_at	FLJ32783 Chr:Xp11.23
10	30	227091_at	KIAA1505 Chr:7p12.3
11	41	231077_at	MGC20470 Chr:11p15.4
12	22	220390_at	FLJ23598 Chr:11p11.2
13	23	220591_s_at	FLJ22843 Chr:xp11.4
14	11	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	51	236222_at	AAT1 Chr:3q12-q13.3
17	46	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	15	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	66	243087_at	NYD-SP29 Chr:1p22.3
21	12	205714_s_at	ZMYND10 Chr:3p21.3
22	48	233516_s_at	PF6 Chr:1p12
23	63	240857_at	DNAH9 Chr:17p12
24	54	236909_at	LOC129881 Chr:2q31.1
25	45	231549_at	MGC35194 Chr:1p36.21
26	53	236717_at	LOC165186 Chr:2p23.3
27	62	240065_at	FLJ25333 Chr:5q15
28	56	237281_at	AKAP28 Chr:xq25
29	42	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	34	229169_at	TTC18 Chr:10q22.3
32	67	243802_at	FLJ40427 Chr:3p21.2
33	19	220168_at	CASC1 Chr:12p12.1
34	61	239916_at	LOC146845 Chr:17p13.1
35	24	220636_at	DNAI2 Chr:17q25
36	64	241310_at	--- ---
37	55	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	57	238116_at	DNCL2B Chr:16q23.3
39	60	239776_at	--- Chr:5q22.1
40	38	230093_at	TSGA2 Chr:21q22.3
41	20	220269_at	FLJ23049 Chr:3q26.2
42	13	206197_at	NME5 Chr:5q31
43	52	236325_at	--- ---
44	33	229012_at	C9orf24 Chr:9p13.2
45	27	224463_s_at	MGC13040 Chr:11q22.2
46	58	238327_at	ECGF1 Chr:22q13.33
47	65	241470_x_at	--- ---
48	49	235658_at	--- ---
49	8	202587_s_at	AK1 Chr:9q34.1
50	35	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	17	218876_at	CGI-38 Chr:16q22.1
53	25	222890_at	HSPC065 Chr:16q13
54	18	219703_at	MNS1 Chr:15q21.2
55	28	226872_at	RFX2 Chr:19p13.3-p13.2
56	68	64900_at	CHST5 Chr:16q22.3
57	47	232984_at	HYDIN Chr:16q22.2
58	29	227081_at	DNALI1 Chr:1p35.1
59	43	231319_x_at	KIF9 Chr:3p21.31
60	16	210117_at	SPAG1 Chr:8q22.2
61	9	203397_s_at	GALNT3 Chr:2q24-q31
62	59	238584_at	FLJ22527 Chr:2q37.3
63	32	228450_at	LOC144100 Chr:11p15.2-p15.1
64	40	231068_at	FLJ31196 Chr:17p11.2
65	14	207624_s_at	RPGR Chr:xp11.4
66	36	229331_at	LOC132671 Chr:4q12
67	44	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	19
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 07:08:00

S1_using_G5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=19)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC