S1_using_G4

Super-paramagnetic Clustering of 84 points in a 60 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18	S39 S40 S41	148.cel
2	4	S39 S40 S41	1076.cel
3	21	S39 S40 S41	1553.cel
4	57	S39 S40 S41	428.cel
5	28	S40 S41	1780.cel
6	76	S41	80.cel
7	20	S41	15.cel
8	80	S41	93.cel
9	29	S35 S36 S38	1795R.cel
10	31	S35 S36 S38	1869RR.cel
11	27	S35 S36 S38	1622R.cel
12	8	S35 S36 S38	1297.cel
13	64	S35 S36 S38	534.cel
14	35	S35 S36 S38	218.cel
15	30	S35 S36 S38	1854R.cel
16	53	S35 S36 S38	356bis.cel
17	26	S35 S36 S38	1621.cel
18	38	S35 S36 S38	242.cel
19	19	S35 S36 S38	1497R.cel
20	81	S35 S36 S38	94bis.cel
21	42	S35 S36 S38	274.cel
22	36	S35 S36 S38	222.cel
23	39	S35 S36 S38	246.cel
24	33	S35 S36 S38	211.cel
25	56	S35 S36 S38	396.cel
26	6	S35 S36 S38	1284.cel
27	69	S35 S36 S38	566.cel
28	82	S35 S36 S38	97.cel
29	25	S35 S36 S38	161.cel
30	10	S35 S36 S38	1317.cel
31	37	S35 S36 S38	236.cel
32	24	S35 S36 S38	159.cel
33	58	S35 S36 S38	444.cel
34	23	S35 S36 S38	157.cel
35	79	S35 S36 S38	90.cel
36	2	S35 S36 S38	104.cel
37	60	S35 S36 S38	461.cel
38	67	S35 S36 S38	558.cel
39	49	S35 S36 S38	328.cel
40	3	S35 S36 S38	106.cel
41	62	S35 S36 S38	527.cel
42	74	S35 S36 S38	65R.cel
43	78	S35 S36 S38	84.cel
44	83	S35 S36 S38	ge197.cel
45	46	S35 S36 S38	30.cel
46	48	S35 S36 S38	323.cel
47	61	S35 S36 S38	506.cel
48	59	S35 S36 S38	458.cel
49	50	S35 S36 S38	344.cel
50	68	S35 S36 S38	563.cel
51	63	S36 S38	528bis.cel
52	11	S36 S38	1357.cel
53	65	S36 S38	547.cel
54	14	S38	1430.cel
55	15	S37 S38	1437.cel
56	12	S37 S38	1360.cel
57	9	S37 S38	1308.cel
58	32	S37 S38	190.cel
59	13	S33 S37 S38	1399.cel
60	22	S32 S33 S37 S38	155R.cel
61	40	S32 S33 S37 S38	254.cel
62	45	S32 S33 S37 S38	288.cel
63	75	S32 S33 S37 S38	70.cel
64	1	S37 S38	100R.cel
65	70	S37 S38	57.cel
66	43	S37 S38	283.cel
67	51	S37 S38	345.cel
68	7	S34 S37 S38	129.cel
69	41	S34 S37 S38	269.cel
70	52	S34 S37 S38	349.cel
71	54	S34 S37 S38	360.cel
72	16	S37 S38	1453.cel
73	47	S37 S38	300.cel
74	66	S37 S38	55.cel
75	77	S38	83.cel
76	34	S38	212R.cel
77	5	S38	12.cel
78	44	S38	284.cel
79	55	S38	390.cel
80	17	S38	147.cel
81	71	S38	574.cel
82	84	S38	ge205.cel
83	72	S38	57R.cel
84	73	S38	63.cel

Genes Names

1	34	218469_at	GREM1 Chr:15q13-q15
2	27	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	25	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	30	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	26	211836_s_at	MOG Chr:6p22-p21.3
6	44	228624_at	FLJ11155 Chr:4q32.1
7	13	204733_at	KLK6 Chr:19q13.3
8	36	219750_at	FLJ11155 Chr:4q32.1
9	32	217613_at	FLJ11155 Chr:4q32.1
10	33	218094_s_at	C20orf35 Chr:20q13.12
11	17	205989_s_at	MOG Chr:6p22-p21.3
12	41	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	42	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	37	220026_at	CLCA4 Chr:1p31-p22
17	19	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	21	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	29	213371_at	LDB3 Chr:10q22.3-q23.2
22	24	210657_s_at	PNUTL2 Chr:17q22-q23
23	23	210193_at	MOBP Chr:3p21.33
24	28	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	54	238498_at	--- ---
27	31	214650_x_at	MOG Chr:6p22-p21.3
28	14	204777_s_at	MAL Chr:2cen-q13
29	46	229781_at	--- ---
30	45	228891_at	LOC349236 Chr:9q22.2
31	60	242765_at	MOBP Chr:3p21.33
32	22	210169_at	KIAA0420 Chr:16p13.3
33	47	231911_at	KIAA1189 Chr:2q24.2
34	20	207659_s_at	MOBP Chr:3p21.33
35	57	241717_at	LOC285281 Chr:3p21.33
36	53	238008_at	MGC35308 Chr:6q27
37	40	223572_at	KIAA1173 Chr:3p21.33
38	48	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	51	235794_at	MOBP Chr:3p21.33
41	38	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	59	242002_at	TCBA1 Chr:6q21
45	11	204547_at	RAB40B Chr:17q25.3
46	39	222862_s_at	AK5 Chr:1p31
47	49	235342_at	SPOCK3 Chr:4q32.3
48	16	205814_at	GRM3 Chr:7q21.1-q21.2
49	52	236420_s_at	TMEM16D Chr:12q23.3
50	55	239575_at	TMEM10 Chr:10q23-q24
51	58	241833_at	--- ---
52	15	205637_s_at	SH3GL3 Chr:15q24
53	56	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	12	204681_s_at	RAPGEF5 Chr:7p15.3
57	35	219429_at	FA2H Chr:16q23
58	43	227006_at	PPP1R14A Chr:19q13.1
59	50	235476_at	TSBF1 Chr:3q26.1
60	18	207308_at	SLCO1A2 Chr:12p12

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 06:58:56

S1_using_G4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC