S1_using_G3

Super-paramagnetic Clustering of 84 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	15	S29	1437.cel
2	4	S29	1076.cel
3	18	S29	148.cel
4	21	S29	1553.cel
5	28	S29	1780.cel
6	7	S28 S30 S31	129.cel
7	1	S28 S30 S31	100R.cel
8	9	S26 S28 S30 S31	1308.cel
9	32	S26 S28 S30 S31	190.cel
10	13	S26 S28 S30 S31	1399.cel
11	51	S26 S28 S30 S31	345.cel
12	70	S26 S28 S30 S31	57.cel
13	20	S28 S30 S31	15.cel
14	41	S28 S30 S31	269.cel
15	5	S27 S30 S31	12.cel
16	47	S25 S27 S30 S31	300.cel
17	16	S25 S27 S30 S31	1453.cel
18	33	S25 S27 S30 S31	211.cel
19	39	S25 S27 S30 S31	246.cel
20	2	S24 S25 S27 S30 S31	104.cel
21	48	S24 S25 S27 S30 S31	323.cel
22	12	S23 S24 S25 S27 S30 S31	1360.cel
23	17	S23 S24 S25 S27 S30 S31	147.cel
24	31	S23 S24 S25 S27 S30 S31	1869RR.cel
25	42	S23 S24 S25 S27 S30 S31	274.cel
26	10	S23 S24 S25 S27 S30 S31	1317.cel
27	19	S23 S24 S25 S27 S30 S31	1497R.cel
28	25	S23 S24 S25 S27 S30 S31	161.cel
29	27	S23 S24 S25 S27 S30 S31	1622R.cel
30	38	S23 S24 S25 S27 S30 S31	242.cel
31	74	S23 S24 S25 S27 S30 S31	65R.cel
32	46	S23 S24 S25 S27 S30 S31	30.cel
33	30	S23 S24 S25 S27 S30 S31	1854R.cel
34	56	S23 S24 S25 S27 S30 S31	396.cel
35	50	S23 S24 S25 S27 S30 S31	344.cel
36	3	S23 S24 S25 S27 S30 S31	106.cel
37	23	S23 S24 S25 S27 S30 S31	157.cel
38	52	S23 S24 S25 S27 S30 S31	349.cel
39	79	S23 S24 S25 S27 S30 S31	90.cel
40	81	S23 S24 S25 S27 S30 S31	94bis.cel
41	82	S23 S24 S25 S27 S30 S31	97.cel
42	49	S23 S24 S25 S27 S30 S31	328.cel
43	68	S23 S24 S25 S27 S30 S31	563.cel
44	6	S23 S24 S25 S27 S30 S31	1284.cel
45	14	S23 S24 S25 S27 S30 S31	1430.cel
46	36	S23 S24 S25 S27 S30 S31	222.cel
47	53	S23 S24 S25 S27 S30 S31	356bis.cel
48	26	S23 S24 S25 S27 S30 S31	1621.cel
49	37	S23 S24 S25 S27 S30 S31	236.cel
50	58	S23 S24 S25 S27 S30 S31	444.cel
51	40	S23 S24 S25 S27 S30 S31	254.cel
52	57	S23 S24 S25 S27 S30 S31	428.cel
53	24	S23 S24 S25 S27 S30 S31	159.cel
54	59	S23 S24 S25 S27 S30 S31	458.cel
55	77	S23 S24 S25 S27 S30 S31	83.cel
56	75	S23 S24 S25 S27 S30 S31	70.cel
57	35	S23 S24 S25 S27 S30 S31	218.cel
58	78	S23 S24 S25 S27 S30 S31	84.cel
59	62	S23 S24 S25 S27 S30 S31	527.cel
60	80	S23 S24 S25 S27 S30 S31	93.cel
61	22	S23 S24 S25 S27 S30 S31	155R.cel
62	60	S23 S24 S25 S27 S30 S31	461.cel
63	69	S23 S24 S25 S27 S30 S31	566.cel
64	64	S23 S24 S25 S27 S30 S31	534.cel
65	54	S23 S24 S25 S27 S30 S31	360.cel
66	61	S24 S25 S27 S30 S31	506.cel
67	73	S24 S25 S27 S30 S31	63.cel
68	66	S25 S27 S30 S31	55.cel
69	76	S25 S27 S30 S31	80.cel
70	71	S25 S27 S30 S31	574.cel
71	29	S25 S27 S30 S31	1795R.cel
72	43	S25 S27 S30 S31	283.cel
73	44	S25 S27 S30 S31	284.cel
74	45	S25 S27 S30 S31	288.cel
75	55	S25 S27 S30 S31	390.cel
76	67	S25 S27 S30 S31	558.cel
77	84	S25 S27 S30 S31	ge205.cel
78	83	S25 S27 S30 S31	ge197.cel
79	11	S25 S27 S30 S31	1357.cel
80	63	S25 S27 S30 S31	528bis.cel
81	8	S31	1297.cel
82	65	S31	547.cel
83	34	S31	212R.cel
84	72	S31	57R.cel

Genes Names

1	11	203798_s_at	VSNL1 Chr:2p24.3
2	50	228262_at	FLJ14503 Chr:xp22.13
3	22	206376_at	SLC6A15 Chr:12q21.3
4	49	227702_at	CYP4X1 Chr:1p33
5	23	206456_at	GABRA5 Chr:15q11.2-q12
6	67	243929_at	--- ---
7	39	219937_at	TRHDE Chr:12q15-q21
8	34	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	36	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	24	206678_at	GABRA1 Chr:5q34-q35
13	57	233002_at	KIAA1622 Chr:14q32.2
14	53	230137_at	FLJ30834 Chr:4q27
15	40	220030_at	STYK1 Chr:12p13.31
16	25	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	14	204081_at	NRGN Chr:11q24
20	30	213921_at	SST Chr:3q28
21	17	205113_at	NEF3 Chr:8p21
22	15	204229_at	SLC17A7 Chr:19q13
23	66	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	55	231489_x_at	--- ---
26	21	205827_at	CCK Chr:3p22-p21.3
27	68	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	45	224650_at	MAL2 Chr:8q23
31	13	203999_at	SYT1 Chr:12cen-q21
32	29	210247_at	SYN2 Chr:3p25
33	56	232426_at	--- ---
34	69	52837_at	KIAA1644 Chr:22q13
35	41	220359_s_at	ARPP-21 Chr:3p22.1
36	42	221217_s_at	A2BP1 Chr:16p13.3
37	12	203998_s_at	SYT1 Chr:12cen-q21
38	28	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	54	230551_at	--- ---
41	59	237384_x_at	--- ---
42	58	236456_at	PTPN5 Chr:11p15.1
43	65	241807_x_at	--- ---
44	19	205635_at	HAPIP Chr:3q21.2
45	31	214044_at	RYR2 Chr:1q42.1-q43
46	9	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	51	229039_at	SYN2 Chr:3p25
48	16	204546_at	KIAA0513 Chr:16q24.1
49	10	202507_s_at	SNAP25 Chr:20p12-p11.2
50	38	219671_at	HPCAL4 Chr:1p34.2
51	47	226086_at	SYT13 Chr:11p12-p11
52	18	205414_s_at	KIAA0672 Chr:17p12
53	37	219659_at	ATP8A2 Chr:13q12-13
54	27	210040_at	SLC12A5 Chr:20q13.12
55	63	241399_at	TAFA2 Chr:12q13.3-q14.1
56	46	225111_s_at	NAPB Chr:20p12.3-p11.21
57	62	239765_at	--- ---
58	48	227053_at	PACSIN1 Chr:6p21.3
59	35	214956_at	--- ---
60	60	239357_at	--- ---
61	32	214098_at	KIAA1107 Chr:1p22.1
62	33	214811_at	KIAA0318 Chr:12q24.33
63	44	224209_s_at	GDA Chr:9q21.11-21.33
64	20	205691_at	SYNGR3 Chr:16p13
65	26	209726_at	CA11 Chr:19q13.3
66	61	239579_at	ABHD7 Chr:1p22.1
67	43	224164_at	TPM3 Chr:1q21.2
68	52	229254_at	DKFZp761N1114 Chr:1q32.1
69	64	241672_at	LOC400120 Chr:13q13.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 06:47:02

S1_using_G3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC