S1_using_G29

Super-paramagnetic Clustering of 84 points in a 101 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	28	S271 S279	1780.cel
2	18	S271 S279	148.cel
3	43	S271 S279	283.cel
4	4	S271 S279	1076.cel
5	21	S271 S279	1553.cel
6	20	S279	15.cel
7	66	S279	55.cel
8	39	S273 S279	246.cel
9	45	S273 S279	288.cel
10	48	S273 S279	323.cel
11	31	S273 S279	1869RR.cel
12	74	S273 S279	65R.cel
13	35	S270 S282	218.cel
14	78	S270 S282	84.cel
15	69	S270 S282	566.cel
16	22	S270 S282	155R.cel
17	7	S282	129.cel
18	10	S282	1317.cel
19	2	S282	104.cel
20	68	S281 S282	563.cel
21	26	S281 S282	1621.cel
22	38	S281 S282	242.cel
23	60	S278 S281 S282	461.cel
24	62	S278 S281 S282	527.cel
25	36	S278 S281 S282	222.cel
26	12	S278 S281 S282	1360.cel
27	9	S278 S281 S282	1308.cel
28	15	S278 S281 S282	1437.cel
29	51	S278 S281 S282	345.cel
30	63	S278 S281 S282	528bis.cel
31	40	S278 S281 S282	254.cel
32	67	S278 S281 S282	558.cel
33	76	S278 S281 S282	80.cel
34	32	S278 S281 S282	190.cel
35	80	S281 S282	93.cel
36	14	S276 S282	1430.cel
37	11	S276 S282	1357.cel
38	24	S276 S282	159.cel
39	3	S274 S276 S282	106.cel
40	44	S274 S276 S282	284.cel
41	17	S274 S276 S282	147.cel
42	53	S274 S276 S282	356bis.cel
43	81	S274 S276 S282	94bis.cel
44	65	S269 S280 S282	547.cel
45	19	S269 S280 S282	1497R.cel
46	13	S269 S280 S282	1399.cel
47	8	S269 S280 S282	1297.cel
48	71	S280 S282	574.cel
49	5	S282	12.cel
50	23	S272 S282	157.cel
51	79	S272 S282	90.cel
52	34	S272 S282	212R.cel
53	77	S272 S282	83.cel
54	59	S282	458.cel
55	37	S282	236.cel
56	50	S282	344.cel
57	55	S277 S282	390.cel
58	1	S277 S282	100R.cel
59	29	S277 S282	1795R.cel
60	57	S277 S282	428.cel
61	61	S277 S282	506.cel
62	27	S275 S277 S282	1622R.cel
63	16	S275 S277 S282	1453.cel
64	83	S275 S277 S282	ge197.cel
65	42	S275 S277 S282	274.cel
66	54	S275 S277 S282	360.cel
67	70	S275 S277 S282	57.cel
68	25	S282	161.cel
69	82	S282	97.cel
70	30	S282	1854R.cel
71	47	S282	300.cel
72	6	S282	1284.cel
73	41	S282	269.cel
74	72	S282	57R.cel
75	46	S282	30.cel
76	56	S282	396.cel
77	64	S282	534.cel
78	58	S282	444.cel
79	33	S282	211.cel
80	52	S282	349.cel
81	49	S282	328.cel
82	84	S282	ge205.cel
83	73	S282	63.cel
84	75	S282	70.cel

Genes Names

1	31	204825_at	MELK Chr:9p13.1
2	23	204162_at	KNTC2 Chr:18p11.31
3	7	202503_s_at	KIAA0101 Chr:15q22.1
4	45	209773_s_at	RRM2 Chr:2p25-p24
5	4	201890_at	RRM2 Chr:2p25-p24
6	56	218039_at	NUSAP1 Chr:15q14
7	77	222848_at	FKSG14 Chr:5p15.2-q12.3
8	60	218662_s_at	HCAP-G Chr:4p16-p15
9	17	203755_at	BUB1B Chr:15q15
10	53	214710_s_at	CCNB1 Chr:5q12
11	20	204026_s_at	ZWINT Chr:10q21-q22
12	12	203213_at	CDC2 Chr:10q21.1
13	26	204244_s_at	ASK Chr:7q21.3
14	41	208079_s_at	STK6 Chr:20q13.2-q13.3
15	3	201292_at	TOP2A Chr:17q21-q22
16	46	210052_s_at	TPX2 Chr:20q11.2
17	2	201291_s_at	TOP2A Chr:17q21-q22
18	10	202705_at	CCNB2 Chr:15q21.3
19	62	218755_at	KIF20A Chr:5q31
20	13	203358_s_at	EZH2 Chr:7q35-q36
21	18	203764_at	DLG7 Chr:14q22.2
22	65	219148_at	TOPK Chr:8p21.2
23	11	202870_s_at	CDC20 Chr:1p34.1
24	90	228273_at	FLJ11029 Chr:17q23.2
25	61	218663_at	HCAP-G Chr:4p16-p15
26	68	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	92	228729_at	CCNB1 Chr:5q12
28	15	203554_x_at	PTTG1 Chr:5q35.1
29	22	204146_at	PIR51 Chr:12p13.2-p13.1
30	57	218355_at	KIF4A Chr:xq13.1
31	32	204962_s_at	CENPA Chr:2p24-p21
32	64	218883_s_at	KLIP1 Chr:4q35.1
33	55	218009_s_at	PRC1 Chr:15q26.1
34	47	210559_s_at	CDC2 Chr:10q21.1
35	40	207828_s_at	CENPF Chr:1q32-q41
36	44	209642_at	BUB1 Chr:2q14
37	75	222740_at	ATAD2 Chr:8q24.13
38	79	223381_at	CDCA1 Chr:1q23.2
39	66	219306_at	KNSL7 Chr:3p21.32
40	50	213226_at	PMSCL1 Chr:4q27
41	69	219918_s_at	ASPM Chr:1q31
42	96	230165_at	SGOL2 Chr:2q33.2
43	27	204444_at	KIF11 Chr:10q24.1
44	34	205046_at	CENPE Chr:4q24-q25
45	14	203362_s_at	MAD2L1 Chr:4q27
46	49	213007_at	FLJ10719 Chr:15q25-q26
47	99	236641_at	KIF14 Chr:1pter-q31.3
48	30	204822_at	TTK Chr:6q13-q21
49	43	209172_s_at	CENPF Chr:1q32-q41
50	91	228323_at	AF15Q14 Chr:15q14
51	86	226980_at	XTP1 Chr:5q12.1
52	73	222077_s_at	RACGAP1 Chr:12q13.12
53	59	218585_s_at	RAMP Chr:1q32.1-q32.2
54	74	222680_s_at	RAMP Chr:1q32.1-q32.2
55	29	204641_at	NEK2 Chr:1q32.2-q41
56	100	238756_at	LOC283431 Chr:12q23.3
57	81	224428_s_at	CDCA7 Chr:2q31
58	9	202589_at	TYMS Chr:18p11.32
59	78	223229_at	HSPC150 Chr:1q32.1
60	8	202580_x_at	FOXM1 Chr:12p13
61	24	204170_s_at	CKS2 Chr:9q22
62	63	218875_s_at	FBXO5 Chr:6q25-q26
63	72	222039_at	LOC146909 Chr:17q21.31
64	84	225834_at	MGC57827 ---
65	87	227249_at	NDE1 Chr:16p13.11
66	101	242560_at	FANCD2 Chr:3p26
67	37	206102_at	KIAA0186 Chr:20p11.21
68	21	204033_at	TRIP13 Chr:5p15.33
69	42	208808_s_at	HMGB2 Chr:4q31
70	89	228033_at	E2F7 Chr:12q21.1
71	39	207165_at	HMMR Chr:5q33.2-qter
72	94	229490_s_at	IQGAP3 Chr:1q23.1
73	98	235425_at	SGOL2 Chr:2q33.2
74	54	216237_s_at	MCM5 Chr:22q13.1
75	16	203560_at	GGH Chr:8q12.2
76	25	204240_s_at	SMC2L1 Chr:9q31.2
77	38	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	70	220239_at	KLHL7 Chr:7p15.3
79	51	213906_at	MYBL1 Chr:8q22
80	28	204510_at	CDC7 Chr:1p22
81	88	227350_at	--- ---
82	36	205967_at	HIST1H4C Chr:6p21.3
83	35	205394_at	CHEK1 Chr:11q24-q24
84	93	229305_at	KLIP1 Chr:4q35.1
85	5	202107_s_at	MCM2 Chr:3q21
86	19	204023_at	RFC4 Chr:3q27
87	76	222843_at	FIGNL1 Chr:7p12.2
88	33	205034_at	CCNE2 Chr:8q22.1
89	95	229551_x_at	ZNF367 Chr:9q22
90	97	232315_at	LOC400713 Chr:19q13.41
91	85	226319_s_at	THOC4 Chr:17q25.3
92	58	218542_at	C10orf3 Chr:10q23.33
93	67	219493_at	SHCBP1 Chr:16q11.2
94	71	221521_s_at	Pfs2 Chr:16q24.1
95	6	202421_at	IGSF3 Chr:1p13
96	52	214235_at	CYP3A5 Chr:7q21.1
97	82	225081_s_at	RAM2 Chr:7p15.3
98	83	225655_at	UHRF1 Chr:19p13.3
99	80	223748_at	SLC4A11 Chr:20p12
100	1	201014_s_at	PAICS Chr:4pter-q21
101	48	210983_s_at	MCM7 Chr:7q21.3-q22.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 12:51:33

S1_using_G29

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC