S1_using_G27

Super-paramagnetic Clustering of 84 points in a 79 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	2		104.cel
2	12		1360.cel
3	11	S256 S258 S260 S262	1357.cel
4	30	S256 S258 S260 S262	1854R.cel
5	65	S256 S258 S260 S262	547.cel
6	29	S256 S258 S260 S262	1795R.cel
7	31	S256 S258 S260 S262	1869RR.cel
8	63	S258 S260 S262	528bis.cel
9	8	S258 S260 S262	1297.cel
10	64	S258 S260 S262	534.cel
11	10	S255 S257 S260 S262	1317.cel
12	24	S255 S257 S260 S262	159.cel
13	26	S255 S257 S260 S262	1621.cel
14	7	S254 S255 S257 S260 S262	129.cel
15	3	S254 S255 S257 S260 S262	106.cel
16	13	S254 S255 S257 S260 S262	1399.cel
17	38	S254 S255 S257 S260 S262	242.cel
18	9	S254 S255 S257 S260 S262	1308.cel
19	52	S254 S255 S257 S260 S262	349.cel
20	76	S254 S255 S257 S260 S262	80.cel
21	20	S254 S255 S257 S260 S262	15.cel
22	83	S254 S255 S257 S260 S262	ge197.cel
23	4	S253 S254 S255 S257 S260 S262	1076.cel
24	18	S253 S254 S255 S257 S260 S262	148.cel
25	21	S253 S254 S255 S257 S260 S262	1553.cel
26	28	S253 S254 S255 S257 S260 S262	1780.cel
27	41	S254 S255 S257 S260 S262	269.cel
28	44	S254 S255 S257 S260 S262	284.cel
29	46	S254 S255 S257 S260 S262	30.cel
30	27	S254 S255 S257 S260 S262	1622R.cel
31	39	S254 S255 S257 S260 S262	246.cel
32	40	S254 S255 S257 S260 S262	254.cel
33	22	S254 S255 S257 S260 S262	155R.cel
34	54	S254 S255 S257 S260 S262	360.cel
35	48	S254 S255 S257 S260 S262	323.cel
36	69	S254 S255 S257 S260 S262	566.cel
37	78	S254 S255 S257 S260 S262	84.cel
38	5	S252 S254 S255 S257 S260 S262	12.cel
39	14	S252 S254 S255 S257 S260 S262	1430.cel
40	50	S252 S254 S255 S257 S260 S262	344.cel
41	35	S252 S254 S255 S257 S260 S262	218.cel
42	42	S252 S254 S255 S257 S260 S262	274.cel
43	6	S252 S254 S255 S257 S260 S262	1284.cel
44	36	S252 S254 S255 S257 S260 S262	222.cel
45	70	S252 S254 S255 S257 S260 S262	57.cel
46	75	S252 S254 S255 S257 S260 S262	70.cel
47	72	S252 S254 S255 S257 S260 S262	57R.cel
48	77	S252 S254 S255 S257 S260 S262	83.cel
49	23	S252 S254 S255 S257 S260 S262	157.cel
50	59	S252 S254 S255 S257 S260 S262	458.cel
51	56	S252 S254 S255 S257 S260 S262	396.cel
52	53	S252 S254 S255 S257 S260 S262	356bis.cel
53	57	S252 S254 S255 S257 S260 S262	428.cel
54	68	S252 S254 S255 S257 S260 S262	563.cel
55	81	S252 S254 S255 S257 S260 S262	94bis.cel
56	82	S252 S254 S255 S257 S260 S262	97.cel
57	17	S252 S254 S255 S257 S260 S262	147.cel
58	79	S252 S254 S255 S257 S260 S262	90.cel
59	71	S254 S255 S257 S260 S262	574.cel
60	19	S254 S255 S257 S260 S262	1497R.cel
61	61	S254 S255 S257 S260 S262	506.cel
62	66	S254 S255 S257 S260 S262	55.cel
63	49	S255 S257 S260 S262	328.cel
64	51	S255 S257 S260 S262	345.cel
65	55	S255 S257 S260 S262	390.cel
66	43	S257 S260 S262	283.cel
67	47	S257 S260 S262	300.cel
68	34	S262	212R.cel
69	73	S262	63.cel
70	16	S261	1453.cel
71	25	S261	161.cel
72	33	S261	211.cel
73	15	S261	1437.cel
74	58	S261	444.cel
75	84	S261	ge205.cel
76	60	S261	461.cel
77	32	S261	190.cel
78	1	S261	100R.cel
79	62	S261	527.cel
80	37	S259 S261	236.cel
81	45	S259 S261	288.cel
82	67	S259 S261	558.cel
83	80	S259 S261	93.cel
84	74	S259 S261	65R.cel

Genes Names

1	12	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	48	230763_at	LOC128153 Chr:1q41
4	46	229816_at	FLJ23129 Chr:1p31.3
5	40	228100_at	LOC128344 Chr:1p13.2
6	32	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	26	220302_at	MAK Chr:6q22
9	59	235946_at	FLJ32783 Chr:Xp11.23
10	38	227091_at	KIAA1505 Chr:7p12.3
11	50	231077_at	MGC20470 Chr:11p15.4
12	27	220390_at	FLJ23598 Chr:11p11.2
13	28	220591_s_at	FLJ22843 Chr:xp11.4
14	13	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	60	236222_at	AAT1 Chr:3q12-q13.3
17	55	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	18	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	76	243087_at	NYD-SP29 Chr:1p22.3
21	14	205714_s_at	ZMYND10 Chr:3p21.3
22	57	233516_s_at	PF6 Chr:1p12
23	73	240857_at	DNAH9 Chr:17p12
24	63	236909_at	LOC129881 Chr:2q31.1
25	54	231549_at	MGC35194 Chr:1p36.21
26	62	236717_at	LOC165186 Chr:2p23.3
27	72	240065_at	FLJ25333 Chr:5q15
28	66	237281_at	AKAP28 Chr:xq25
29	51	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	43	229169_at	TTC18 Chr:10q22.3
32	78	243802_at	FLJ40427 Chr:3p21.2
33	24	220168_at	CASC1 Chr:12p12.1
34	71	239916_at	LOC146845 Chr:17p13.1
35	29	220636_at	DNAI2 Chr:17q25
36	74	241310_at	--- ---
37	65	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	67	238116_at	DNCL2B Chr:16q23.3
39	70	239776_at	--- Chr:5q22.1
40	47	230093_at	TSGA2 Chr:21q22.3
41	25	220269_at	FLJ23049 Chr:3q26.2
42	15	206197_at	NME5 Chr:5q31
43	61	236325_at	--- ---
44	42	229012_at	C9orf24 Chr:9p13.2
45	33	224463_s_at	MGC13040 Chr:11q22.2
46	68	238327_at	ECGF1 Chr:22q13.33
47	75	241470_x_at	--- ---
48	58	235658_at	--- ---
49	9	202587_s_at	AK1 Chr:9q34.1
50	44	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	20	218876_at	CGI-38 Chr:16q22.1
53	30	222890_at	HSPC065 Chr:16q13
54	22	219703_at	MNS1 Chr:15q21.2
55	36	226872_at	RFX2 Chr:19p13.3-p13.2
56	79	64900_at	CHST5 Chr:16q22.3
57	56	232984_at	HYDIN Chr:16q22.2
58	37	227081_at	DNALI1 Chr:1p35.1
59	52	231319_x_at	KIF9 Chr:3p21.31
60	19	210117_at	SPAG1 Chr:8q22.2
61	10	203397_s_at	GALNT3 Chr:2q24-q31
62	69	238584_at	FLJ22527 Chr:2q37.3
63	41	228450_at	LOC144100 Chr:11p15.2-p15.1
64	49	231068_at	FLJ31196 Chr:17p11.2
65	16	207624_s_at	RPGR Chr:xp11.4
66	45	229331_at	LOC132671 Chr:4q12
67	53	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13
69	23	219833_s_at	EFHC1 Chr:6p12.3
70	34	225656_at	EFHC1 Chr:6p12.3
71	39	227105_at	FLJ22490 Chr:8q13.1
72	64	236915_at	--- ---
73	21	219229_at	SLCO3A1 Chr:15q26
74	31	223642_at	ZIC2 Chr:13q32
75	8	1562921_at	--- Chr:22q13.2
76	17	207797_s_at	DKFZp761O0113 Chr:4q35.1
77	77	243198_at	LOC161577 Chr:15q21.2
78	11	204187_at	GMPR Chr:6p23
79	35	226558_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 12:16:17

S1_using_G27

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC