S1_using_G26

Super-paramagnetic Clustering of 84 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	66	S237 S239 S244	55.cel
2	28	S237 S239 S244	1780.cel
3	18	S237 S239 S244	148.cel
4	4	S237 S239 S244	1076.cel
5	21	S237 S239 S244	1553.cel
6	43	S237 S239 S244	283.cel
7	20	S239 S244	15.cel
8	31	S238 S244	1869RR.cel
9	74	S238 S244	65R.cel
10	39	S238 S244	246.cel
11	45	S238 S244	288.cel
12	48	S238 S244	323.cel
13	6	S251	1284.cel
14	41	S251	269.cel
15	62	S236 S242 S249 S251	527.cel
16	38	S236 S242 S249 S251	242.cel
17	9	S236 S242 S249 S251	1308.cel
18	32	S236 S242 S249 S251	190.cel
19	76	S236 S242 S249 S251	80.cel
20	40	S242 S249 S251	254.cel
21	68	S249 S251	563.cel
22	26	S249 S251	1621.cel
23	15	S249 S251	1437.cel
24	36	S249 S251	222.cel
25	51	S249 S251	345.cel
26	49	S251	328.cel
27	80	S251	93.cel
28	55	S247 S251	390.cel
29	1	S247 S251	100R.cel
30	75	S247 S251	70.cel
31	29	S241 S247 S251	1795R.cel
32	16	S241 S247 S251	1453.cel
33	57	S241 S247 S251	428.cel
34	61	S241 S247 S251	506.cel
35	83	S241 S247 S251	ge197.cel
36	42	S241 S247 S251	274.cel
37	54	S241 S247 S251	360.cel
38	27	S241 S247 S251	1622R.cel
39	35	S241 S247 S251	218.cel
40	70	S241 S247 S251	57.cel
41	73	S247 S251	63.cel
42	47	S247 S251	300.cel
43	82	S247 S251	97.cel
44	56	S247 S251	396.cel
45	64	S247 S251	534.cel
46	58	S247 S251	444.cel
47	22	S251	155R.cel
48	69	S251	566.cel
49	78	S251	84.cel
50	63	S251	528bis.cel
51	67	S251	558.cel
52	50	S251	344.cel
53	25	S251	161.cel
54	13	S250 S251	1399.cel
55	84	S250 S251	ge205.cel
56	65	S250 S251	547.cel
57	19	S250 S251	1497R.cel
58	8	S250 S251	1297.cel
59	5	S250 S251	12.cel
60	72	S250 S251	57R.cel
61	46	S250 S251	30.cel
62	71	S250 S251	574.cel
63	30	S251	1854R.cel
64	14	S240 S246 S248 S251	1430.cel
65	11	S240 S246 S248 S251	1357.cel
66	24	S240 S246 S248 S251	159.cel
67	81	S240 S246 S248 S251	94bis.cel
68	2	S240 S246 S248 S251	104.cel
69	53	S243 S246 S248 S251	356bis.cel
70	10	S243 S246 S248 S251	1317.cel
71	3	S243 S246 S248 S251	106.cel
72	44	S243 S246 S248 S251	284.cel
73	17	S248 S251	147.cel
74	33	S248 S251	211.cel
75	37	S248 S251	236.cel
76	7	S248 S251	129.cel
77	52	S248 S251	349.cel
78	79	S245 S251	90.cel
79	34	S245 S251	212R.cel
80	23	S245 S251	157.cel
81	77	S245 S251	83.cel
82	59	S251	458.cel
83	12	S251	1360.cel
84	60	S251	461.cel

Genes Names

1	29	204825_at	MELK Chr:9p13.1
2	21	204162_at	KNTC2 Chr:18p11.31
3	5	202503_s_at	KIAA0101 Chr:15q22.1
4	43	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	52	218039_at	NUSAP1 Chr:15q14
7	70	222848_at	FKSG14 Chr:5p15.2-q12.3
8	55	218662_s_at	HCAP-G Chr:4p16-p15
9	15	203755_at	BUB1B Chr:15q15
10	49	214710_s_at	CCNB1 Chr:5q12
11	18	204026_s_at	ZWINT Chr:10q21-q22
12	10	203213_at	CDC2 Chr:10q21.1
13	24	204244_s_at	ASK Chr:7q21.3
14	39	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	44	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	8	202705_at	CCNB2 Chr:15q21.3
19	57	218755_at	KIF20A Chr:5q31
20	11	203358_s_at	EZH2 Chr:7q35-q36
21	16	203764_at	DLG7 Chr:14q22.2
22	60	219148_at	TOPK Chr:8p21.2
23	9	202870_s_at	CDC20 Chr:1p34.1
24	80	228273_at	FLJ11029 Chr:17q23.2
25	56	218663_at	HCAP-G Chr:4p16-p15
26	62	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	82	228729_at	CCNB1 Chr:5q12
28	13	203554_x_at	PTTG1 Chr:5q35.1
29	20	204146_at	PIR51 Chr:12p13.2-p13.1
30	53	218355_at	KIF4A Chr:xq13.1
31	30	204962_s_at	CENPA Chr:2p24-p21
32	59	218883_s_at	KLIP1 Chr:4q35.1
33	51	218009_s_at	PRC1 Chr:15q26.1
34	45	210559_s_at	CDC2 Chr:10q21.1
35	38	207828_s_at	CENPF Chr:1q32-q41
36	42	209642_at	BUB1 Chr:2q14
37	68	222740_at	ATAD2 Chr:8q24.13
38	72	223381_at	CDCA1 Chr:1q23.2
39	61	219306_at	KNSL7 Chr:3p21.32
40	47	213226_at	PMSCL1 Chr:4q27
41	63	219918_s_at	ASPM Chr:1q31
42	86	230165_at	SGOL2 Chr:2q33.2
43	25	204444_at	KIF11 Chr:10q24.1
44	32	205046_at	CENPE Chr:4q24-q25
45	12	203362_s_at	MAD2L1 Chr:4q27
46	46	213007_at	FLJ10719 Chr:15q25-q26
47	89	236641_at	KIF14 Chr:1pter-q31.3
48	28	204822_at	TTK Chr:6q13-q21
49	41	209172_s_at	CENPF Chr:1q32-q41
50	81	228323_at	AF15Q14 Chr:15q14
51	76	226980_at	XTP1 Chr:5q12.1
52	66	222077_s_at	RACGAP1 Chr:12q13.12
53	54	218585_s_at	RAMP Chr:1q32.1-q32.2
54	67	222680_s_at	RAMP Chr:1q32.1-q32.2
55	27	204641_at	NEK2 Chr:1q32.2-q41
56	90	238756_at	LOC283431 Chr:12q23.3
57	73	224428_s_at	CDCA7 Chr:2q31
58	7	202589_at	TYMS Chr:18p11.32
59	71	223229_at	HSPC150 Chr:1q32.1
60	6	202580_x_at	FOXM1 Chr:12p13
61	22	204170_s_at	CKS2 Chr:9q22
62	58	218875_s_at	FBXO5 Chr:6q25-q26
63	65	222039_at	LOC146909 Chr:17q21.31
64	74	225834_at	MGC57827 ---
65	77	227249_at	NDE1 Chr:16p13.11
66	91	242560_at	FANCD2 Chr:3p26
67	35	206102_at	KIAA0186 Chr:20p11.21
68	19	204033_at	TRIP13 Chr:5p15.33
69	40	208808_s_at	HMGB2 Chr:4q31
70	79	228033_at	E2F7 Chr:12q21.1
71	37	207165_at	HMMR Chr:5q33.2-qter
72	84	229490_s_at	IQGAP3 Chr:1q23.1
73	88	235425_at	SGOL2 Chr:2q33.2
74	50	216237_s_at	MCM5 Chr:22q13.1
75	14	203560_at	GGH Chr:8q12.2
76	23	204240_s_at	SMC2L1 Chr:9q31.2
77	36	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	64	220239_at	KLHL7 Chr:7p15.3
79	48	213906_at	MYBL1 Chr:8q22
80	26	204510_at	CDC7 Chr:1p22
81	78	227350_at	--- ---
82	34	205967_at	HIST1H4C Chr:6p21.3
83	33	205394_at	CHEK1 Chr:11q24-q24
84	83	229305_at	KLIP1 Chr:4q35.1
85	4	202107_s_at	MCM2 Chr:3q21
86	17	204023_at	RFC4 Chr:3q27
87	69	222843_at	FIGNL1 Chr:7p12.2
88	31	205034_at	CCNE2 Chr:8q22.1
89	85	229551_x_at	ZNF367 Chr:9q22
90	87	232315_at	LOC400713 Chr:19q13.41
91	75	226319_s_at	THOC4 Chr:17q25.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 12:00:36

S1_using_G26

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC