S1_using_G24

Super-paramagnetic Clustering of 84 points in a 134 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=20)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	40		254.cel
2	22		155R.cel
3	28	S217	1780.cel
4	2	S217	104.cel
5	23	S217	157.cel
6	38	S217	242.cel
7	35	S217	218.cel
8	8	S217	1297.cel
9	66	S217	55.cel
10	37	S217	236.cel
11	6	S217	1284.cel
12	25	S217	161.cel
13	10	S217	1317.cel
14	5	S217	12.cel
15	16	S217	1453.cel
16	18	S217	148.cel
17	3	S217	106.cel
18	26	S217	1621.cel
19	50	S217	344.cel
20	30	S217	1854R.cel
21	57	S217	428.cel
22	14	S217	1430.cel
23	60	S217	461.cel
24	70	S217	57.cel
25	81	S217	94bis.cel
26	15	S217	1437.cel
27	17	S217	147.cel
28	19	S217	1497R.cel
29	27	S217	1622R.cel
30	24	S217	159.cel
31	46	S217	30.cel
32	67	S217	558.cel
33	47	S217	300.cel
34	42	S217	274.cel
35	54	S217	360.cel
36	53	S217	356bis.cel
37	13	S217	1399.cel
38	39	S217	246.cel
39	55	S217	390.cel
40	58	S217	444.cel
41	61	S217	506.cel
42	63	S217	528bis.cel
43	65	S217	547.cel
44	12	S217	1360.cel
45	69	S217	566.cel
46	4	S217	1076.cel
47	9	S217	1308.cel
48	11	S217	1357.cel
49	21	S217	1553.cel
50	62	S217	527.cel
51	20	S217	15.cel
52	76	S217	80.cel
53	32	S217	190.cel
54	33	S217	211.cel
55	7	S217	129.cel
56	41	S217	269.cel
57	43	S217	283.cel
58	51	S217	345.cel
59	29	S217	1795R.cel
60	59	S217	458.cel
61	68	S217	563.cel
62	34	S217	212R.cel
63	36	S217	222.cel
64	56	S217	396.cel
65	44	S217	284.cel
66	71	S217	574.cel
67	72	S217	57R.cel
68	64	S217	534.cel
69	77	S217	83.cel
70	82	S217	97.cel
71	31	S217	1869RR.cel
72	49	S217	328.cel
73	52	S217	349.cel
74	73	S217	63.cel
75	79	S217	90.cel
76	1	S217	100R.cel
77	84	S217	ge205.cel
78	80	S217	93.cel
79	74	S217	65R.cel
80	75		70.cel
81	48		323.cel
82	78		84.cel
83	45		288.cel
84	83		ge197.cel

Genes Names

1	93	218854_at	SART2 Chr:6q22
2	28	203561_at	FCGR2A Chr:1q23
3	88	217388_s_at	KYNU Chr:2q22.3
4	14	201743_at	CD14 Chr:5q31.1
5	69	211429_s_at	--- ---
6	10	201422_at	IFI30 Chr:19p13.1
7	56	206584_at	LY96 Chr:8q13.3
8	46	204971_at	CSTA Chr:3q21
9	95	219607_s_at	MS4A4A Chr:11q12
10	15	202546_at	VAMP8 Chr:2p12-p11.2
11	106	223280_x_at	MS4A6A Chr:11q12.1
12	110	224356_x_at	MS4A6A Chr:11q12.1
13	17	202833_s_at	SERPINA1 Chr:14q32.1
14	35	204174_at	ALOX5AP Chr:13q12
15	127	230550_at	MS4A6A Chr:11q12.1
16	94	219386_s_at	SLAMF8 Chr:1q23.1
17	11	201487_at	CTSC Chr:11q14.1-q14.3
18	96	219666_at	MS4A6A Chr:11q12.1
19	36	204232_at	FCER1G Chr:1q23
20	66	210176_at	TLR1 Chr:4p14
21	83	214770_at	MSR1 Chr:8p22
22	6	1554899_s_at	FCER1G Chr:1q23
23	16	202803_s_at	ITGB2 Chr:21q22.3
24	8	1555728_a_at	MS4A4A Chr:11q12
25	21	202953_at	C1QB Chr:1p36.3-p34.1
26	92	218232_at	C1QA Chr:1p36.3-p34.1
27	80	213566_at	RNASE6 Chr:14q11.2
28	111	225353_s_at	C1QG Chr:1p36.11
29	76	212588_at	PTPRC Chr:1q31-q32
30	7	1555349_a_at	ITGB2 Chr:21q22.3
31	45	204959_at	MNDA Chr:1q22
32	32	204007_at	FCGR3A Chr:1q23
33	13	201721_s_at	LAPTM5 Chr:1p34
34	43	204787_at	Z39IG Chr:xq12-q13.3
35	33	204122_at	TYROBP Chr:19q13.1
36	18	202901_x_at	CTSS Chr:1q21
37	54	206111_at	RNASE2 Chr:14q24-q31
38	120	228532_at	MGC24133 Chr:1p13.2
39	81	214467_at	GPR65 Chr:14q31-q32.1
40	31	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	58	208018_s_at	HCK Chr:20q11-q12
43	129	232617_at	CTSS Chr:1q21
44	22	202957_at	HCLS1 Chr:3q13
45	19	202902_s_at	CTSS Chr:1q21
46	40	204446_s_at	ALOX5 Chr:10q11.2
47	122	229560_at	TLR8 Chr:xp22
48	50	205786_s_at	ITGAM Chr:16p11.2
49	100	220330_s_at	SAMSN1 Chr:21q11
50	117	227266_s_at	FYB Chr:5p13.1
51	105	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	26	203416_at	CD53 Chr:1p13
53	124	229937_x_at	LILRB1 Chr:19q13.4
54	87	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	67	210314_x_at	TNFSF13 Chr:17p13.1
56	5	1552807_a_at	SIGLEC10 Chr:19q13.3
57	115	226068_at	SYK Chr:9q22
58	112	225502_at	DOCK8 Chr:9p24.3
59	91	217983_s_at	RNASET2 Chr:6q27
60	23	203104_at	CSF1R Chr:5q33-q35
61	130	232843_s_at	DOCK8 Chr:9p24.3
62	82	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	118	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	89	217478_s_at	HLA-DMA Chr:6p21.3
65	63	209312_x_at	HLA-DRB1 Chr:6p21.3
66	68	210982_s_at	HLA-DRA Chr:6p21.3
67	85	215193_x_at	HLA-DRB3 Chr:6p21.3
68	60	208306_x_at	HLA-DRB3 Chr:6p21.3
69	61	208894_at	HLA-DRA Chr:6p21.3
70	42	204670_x_at	HLA-DRB3 Chr:6p21.3
71	64	209619_at	CD74 Chr:5q32
72	78	212998_x_at	HLA-DQB1 Chr:6p21.3
73	70	211654_x_at	HLA-DQB1 Chr:6p21.3
74	74	211991_s_at	HLA-DPA1 Chr:6p21.3
75	107	223343_at	MS4A7 Chr:11q12
76	9	201137_s_at	HLA-DPB1 Chr:6p21.3
77	71	211656_x_at	HLA-DQB1 Chr:6p21.3
78	65	209823_x_at	HLA-DQB1 Chr:6p21.3
79	4	1552386_at	FLJ33641 Chr:5q12.1
80	79	213537_at	HLA-DPA1 Chr:6p21.3
81	77	212671_s_at	HLA-DQA1 Chr:6p21.3
82	116	227265_at	--- ---
83	73	211990_at	HLA-DPA1 Chr:6p21.3
84	126	230391_at	--- ---
85	99	220146_at	TLR7 Chr:xp22.3
86	53	205997_at	ADAM28 Chr:8p21.2
87	108	223620_at	GPR34 Chr:xp11.4-p11.3
88	72	211742_s_at	EVI2B Chr:17q11.2
89	123	229723_at	TAGAP Chr:6q25.3
90	34	204150_at	STAB1 Chr:3p21.31
91	134	38487_at	STAB1 Chr:3p21.31
92	125	230252_at	GPR92 Chr:12p13.31
93	55	206420_at	IGSF6 Chr:16p12-p13
94	128	230925_at	APBB1IP Chr:10p12.2
95	29	203645_s_at	CD163 Chr:12p13.3
96	84	215049_x_at	CD163 Chr:12p13.3
97	103	221210_s_at	NPL Chr:1q25
98	25	203305_at	F13A1 Chr:6p25.3-p24.3
99	113	225646_at	CTSC Chr:11q14.1-q14.3
100	114	225647_s_at	CTSC Chr:11q14.1-q14.3
101	2	1552365_at	SCIN Chr:7p21.3
102	38	204430_s_at	SLC2A5 Chr:1p36.2
103	57	207655_s_at	BLNK Chr:10q23.2-q23.33
104	86	216233_at	CD163 Chr:12p13.3
105	3	1552367_a_at	SCIN Chr:7p21.3
106	44	204834_at	FGL2 Chr:7q11.23
107	90	217767_at	C3 Chr:19p13.3-p13.2
108	102	220532_s_at	LR8 Chr:7q36.1
109	20	202917_s_at	S100A8 Chr:1q21
110	27	203535_at	S100A9 Chr:1q21
111	101	220491_at	HAMP Chr:19q13.1
112	48	205119_s_at	FPR1 Chr:19q13.4
113	109	223660_at	AD026 Chr:1p13.2
114	75	212543_at	AIM1 Chr:6q21
115	98	220005_at	GPR86 Chr:3q24
116	52	205898_at	CX3CR1 Chr:3p21.3
117	119	227889_at	CAPNS2 Chr:16q13
118	37	204416_x_at	APOC1 Chr:19q13.2
119	51	205890_s_at	UBD Chr:6p21.3
120	59	208146_s_at	CPVL Chr:7p15-p14
121	30	203665_at	HMOX1 Chr:22q13.1
122	132	236028_at	IBSP Chr:4q21-q25
123	133	244434_at	--- ---
124	41	204563_at	SELL Chr:1q23-q25
125	39	204438_at	MRC1 Chr:10p13
126	97	219890_at	CLECSF5 Chr:7q33
127	131	234987_at	--- Chr:20q11.23
128	47	205027_s_at	MAP3K8 Chr:10p12.1
129	62	208944_at	TGFBR2 Chr:3p22
130	12	201631_s_at	IER3 Chr:6p21.3
131	49	205681_at	BCL2A1 Chr:15q24.3
132	24	203290_at	HLA-DQA1 Chr:6p21.3
133	104	221491_x_at	HLA-DRB3 Chr:6p21.3
134	121	229074_at	EHD4 Chr:15q11.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	20
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 11:26:50

S1_using_G24

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=20)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC