S1_using_G22

Super-paramagnetic Clustering of 84 points in a 34 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	31		1869RR.cel
2	29		1795R.cel
3	4	S202 S208	1076.cel
4	5	S202 S208	12.cel
5	15	S202 S208	1437.cel
6	18	S202 S208	148.cel
7	21	S208	1553.cel
8	28	S208	1780.cel
9	45	S198 S200 S210	288.cel
10	40	S198 S200 S210	254.cel
11	74	S198 S200 S210	65R.cel
12	22	S198 S200 S210	155R.cel
13	16	S200 S210	1453.cel
14	69	S203 S207 S210	566.cel
15	13	S203 S207 S210	1399.cel
16	54	S203 S207 S210	360.cel
17	61	S203 S207 S210	506.cel
18	64	S203 S207 S210	534.cel
19	75	S203 S207 S210	70.cel
20	63	S207 S210	528bis.cel
21	44	S210	284.cel
22	65	S210	547.cel
23	3	S210	106.cel
24	56	S209 S210	396.cel
25	49	S209 S210	328.cel
26	38	S209 S210	242.cel
27	1	S209 S210	100R.cel
28	30	S209 S210	1854R.cel
29	6	S205 S209 S210	1284.cel
30	26	S205 S209 S210	1621.cel
31	36	S205 S209 S210	222.cel
32	51	S205 S209 S210	345.cel
33	79	S205 S209 S210	90.cel
34	2	S204 S209 S210	104.cel
35	17	S204 S209 S210	147.cel
36	70	S204 S209 S210	57.cel
37	48	S204 S209 S210	323.cel
38	78	S206 S209 S210	84.cel
39	12	S206 S209 S210	1360.cel
40	37	S206 S209 S210	236.cel
41	11	S206 S209 S210	1357.cel
42	7	S206 S209 S210	129.cel
43	9	S206 S209 S210	1308.cel
44	24	S206 S209 S210	159.cel
45	76	S206 S209 S210	80.cel
46	8	S206 S209 S210	1297.cel
47	80	S206 S209 S210	93.cel
48	84	S206 S209 S210	ge205.cel
49	66	S201 S206 S209 S210	55.cel
50	20	S201 S206 S209 S210	15.cel
51	47	S201 S206 S209 S210	300.cel
52	67	S201 S206 S209 S210	558.cel
53	55	S206 S209 S210	390.cel
54	82	S206 S209 S210	97.cel
55	33	S206 S209 S210	211.cel
56	27	S206 S209 S210	1622R.cel
57	19	S206 S209 S210	1497R.cel
58	42	S206 S209 S210	274.cel
59	41	S206 S209 S210	269.cel
60	35	S206 S209 S210	218.cel
61	52	S206 S209 S210	349.cel
62	57	S199 S206 S209 S210	428.cel
63	25	S199 S206 S209 S210	161.cel
64	60	S199 S206 S209 S210	461.cel
65	46	S199 S206 S209 S210	30.cel
66	81	S199 S206 S209 S210	94bis.cel
67	23	S199 S206 S209 S210	157.cel
68	53	S199 S206 S209 S210	356bis.cel
69	59	S199 S206 S209 S210	458.cel
70	68	S199 S206 S209 S210	563.cel
71	58	S199 S206 S209 S210	444.cel
72	71	S199 S206 S209 S210	574.cel
73	32	S209 S210	190.cel
74	39	S209 S210	246.cel
75	50	S209 S210	344.cel
76	83	S210	ge197.cel
77	43	S210	283.cel
78	10	S210	1317.cel
79	62	S210	527.cel
80	14		1430.cel
81	77		83.cel
82	34		212R.cel
83	72		57R.cel
84	73		63.cel

Genes Names

1	9	205498_at	GHR Chr:5p13-p12
2	10	206953_s_at	LPHN2 Chr:1p31.1
3	2	201925_s_at	DAF Chr:1q32
4	21	226210_s_at	MEG3 Chr:14q32
5	22	226211_at	MEG3 Chr:14q32
6	3	202409_at	--- ---
7	4	202410_x_at	IGF2 Chr:11p15.5
8	6	203477_at	COL15A1 Chr:9q21-q22
9	11	207002_s_at	PLAGL1 Chr:6q24-q25
10	12	207943_x_at	PLAGL1 Chr:6q24-q25
11	13	209318_x_at	PLAGL1 Chr:6q24-q25
12	20	215513_at	HYMAI Chr:6q24
13	28	232355_at	--- ---
14	7	203924_at	GSTA1 Chr:6p12.1
15	8	204548_at	STAR Chr:8p11.2
16	5	202965_s_at	CAPN6 Chr:xq23
17	17	212713_at	MFAP4 Chr:17p11.2
18	14	209560_s_at	DLK1 Chr:14q32
19	15	210002_at	GATA6 Chr:18q11.1-q11.2
20	1	1559282_at	--- ---
21	24	227297_at	ITGA9 Chr:3p21.3
22	26	227911_at	FLJ10312 Chr:18p11.23
23	27	227947_at	C6orf56 Chr:6q24.1
24	31	236220_at	--- ---
25	33	239006_at	SLC26A7 Chr:8q23
26	19	213943_at	TWIST1 Chr:7p21.2
27	32	237945_at	--- ---
28	34	242856_at	--- ---
29	23	226905_at	MGC45871 Chr:17p13
30	25	227646_at	EBF Chr:5q34
31	29	233261_at	EBF Chr:5q34
32	16	210794_s_at	MEG3 Chr:14q32
33	18	212956_at	KIAA0882 Chr:4q31.1
34	30	234994_at	KIAA1913 Chr:6q23.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 11:02:39

S1_using_G22

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC