S1_using_G19

Super-paramagnetic Clustering of 84 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	4	S176 S178	1076.cel
2	18	S176 S178	148.cel
3	21	S176 S178	1553.cel
4	28	S176 S178	1780.cel
5	57	S178	428.cel
6	20	S178	15.cel
7	76	S178	80.cel
8	80	S178	93.cel
9	33	S175 S177	211.cel
10	17	S175 S177	147.cel
11	11	S175 S177	1357.cel
12	14	S175 S177	1430.cel
13	12	S175 S177	1360.cel
14	7	S175 S177	129.cel
15	13	S175 S177	1399.cel
16	15	S175 S177	1437.cel
17	1	S175 S177	100R.cel
18	70	S175 S177	57.cel
19	9	S175 S177	1308.cel
20	32	S175 S177	190.cel
21	41	S175 S177	269.cel
22	43	S175 S177	283.cel
23	40	S175 S177	254.cel
24	22	S175 S177	155R.cel
25	45	S175 S177	288.cel
26	75	S175 S177	70.cel
27	52	S175 S177	349.cel
28	54	S175 S177	360.cel
29	5	S175 S177	12.cel
30	71	S175 S177	574.cel
31	77	S175 S177	83.cel
32	16	S175 S177	1453.cel
33	47	S175 S177	300.cel
34	66	S175 S177	55.cel
35	51	S175 S177	345.cel
36	44	S175 S177	284.cel
37	55	S175 S177	390.cel
38	84	S175 S177	ge205.cel
39	8	S175 S177	1297.cel
40	63	S175 S177	528bis.cel
41	29	S175 S177	1795R.cel
42	64	S175 S177	534.cel
43	65	S175 S177	547.cel
44	31	S175 S177	1869RR.cel
45	10	S174 S175 S177	1317.cel
46	3	S174 S175 S177	106.cel
47	36	S174 S175 S177	222.cel
48	39	S174 S175 S177	246.cel
49	19	S174 S175 S177	1497R.cel
50	23	S174 S175 S177	157.cel
51	2	S174 S175 S177	104.cel
52	26	S174 S175 S177	1621.cel
53	37	S174 S175 S177	236.cel
54	30	S174 S175 S177	1854R.cel
55	42	S174 S175 S177	274.cel
56	81	S174 S175 S177	94bis.cel
57	50	S174 S175 S177	344.cel
58	58	S174 S175 S177	444.cel
59	59	S174 S175 S177	458.cel
60	38	S174 S175 S177	242.cel
61	61	S174 S175 S177	506.cel
62	74	S174 S175 S177	65R.cel
63	25	S174 S175 S177	161.cel
64	78	S174 S175 S177	84.cel
65	83	S174 S175 S177	ge197.cel
66	79	S174 S175 S177	90.cel
67	6	S174 S175 S177	1284.cel
68	24	S174 S175 S177	159.cel
69	35	S174 S175 S177	218.cel
70	27	S174 S175 S177	1622R.cel
71	48	S174 S175 S177	323.cel
72	56	S174 S175 S177	396.cel
73	53	S174 S175 S177	356bis.cel
74	69	S174 S175 S177	566.cel
75	46	S174 S175 S177	30.cel
76	82	S174 S175 S177	97.cel
77	49	S174 S175 S177	328.cel
78	62	S174 S175 S177	527.cel
79	67	S174 S175 S177	558.cel
80	60	S174 S175 S177	461.cel
81	68	S175 S177	563.cel
82	34	S175 S177	212R.cel
83	72	S175 S177	57R.cel
84	73	S177	63.cel

Genes Names

1	38	218469_at	GREM1 Chr:15q13-q15
2	28	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	26	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	33	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	27	211836_s_at	MOG Chr:6p22-p21.3
6	56	228624_at	FLJ11155 Chr:4q32.1
7	14	204733_at	KLK6 Chr:19q13.3
8	42	219750_at	FLJ11155 Chr:4q32.1
9	36	217613_at	FLJ11155 Chr:4q32.1
10	37	218094_s_at	C20orf35 Chr:20q13.12
11	18	205989_s_at	MOG Chr:6p22-p21.3
12	47	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	50	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	43	220026_at	CLCA4 Chr:1p31-p22
17	20	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	22	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	31	213371_at	LDB3 Chr:10q22.3-q23.2
22	25	210657_s_at	PNUTL2 Chr:17q22-q23
23	24	210193_at	MOBP Chr:3p21.33
24	30	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	70	238498_at	--- ---
27	34	214650_x_at	MOG Chr:6p22-p21.3
28	15	204777_s_at	MAL Chr:2cen-q13
29	58	229781_at	--- ---
30	57	228891_at	LOC349236 Chr:9q22.2
31	78	242765_at	MOBP Chr:3p21.33
32	23	210169_at	KIAA0420 Chr:16p13.3
33	60	231911_at	KIAA1189 Chr:2q24.2
34	21	207659_s_at	MOBP Chr:3p21.33
35	74	241717_at	LOC285281 Chr:3p21.33
36	69	238008_at	MGC35308 Chr:6q27
37	46	223572_at	KIAA1173 Chr:3p21.33
38	61	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	66	235794_at	MOBP Chr:3p21.33
41	44	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	77	242002_at	TCBA1 Chr:6q21
45	12	204547_at	RAB40B Chr:17q25.3
46	45	222862_s_at	AK5 Chr:1p31
47	64	235342_at	SPOCK3 Chr:4q32.3
48	17	205814_at	GRM3 Chr:7q21.1-q21.2
49	67	236420_s_at	TMEM16D Chr:12q23.3
50	71	239575_at	TMEM10 Chr:10q23-q24
51	75	241833_at	--- ---
52	16	205637_s_at	SH3GL3 Chr:15q24
53	72	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	13	204681_s_at	RAPGEF5 Chr:7p15.3
57	41	219429_at	FA2H Chr:16q23
58	52	227006_at	PPP1R14A Chr:19q13.1
59	65	235476_at	TSBF1 Chr:3q26.1
60	19	207308_at	SLCO1A2 Chr:12p12
61	29	212750_at	PPP1R16B Chr:20q12
62	40	219305_x_at	FBXO2 Chr:1p36.21
63	80	41577_at	PPP1R16B Chr:20q12
64	79	244113_at	--- ---
65	35	214769_at	CLCN4 Chr:Xp22.3
66	39	218651_s_at	FLJ11196 Chr:15q22.32
67	48	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	76	241873_at	UNC5C Chr:4q21-q23
69	51	226018_at	Ells1 Chr:7p15.1
70	54	227440_at	EB-1 Chr:12q23.1-q23.2
71	59	230104_s_at	p25 Chr:5p15.3
72	73	240292_x_at	EB-1 Chr:12q23.1-q23.2
73	53	227439_at	EB-1 Chr:12q23.1-q23.2
74	55	227441_s_at	EB-1 Chr:12q23.1-q23.2
75	62	234261_at	--- ---
76	68	236838_at	--- ---
77	11	204467_s_at	SNCA Chr:4q21
78	49	225727_at	PLEKHH1 Chr:14q24.1
79	63	235236_at	--- ---
80	32	213839_at	KIAA0500 Chr:14q32.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 10:15:27

S1_using_G19

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC