S1_using_G18

Super-paramagnetic Clustering of 84 points in a 25 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=19)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	8		1297.cel
2	34		212R.cel
3	72		57R.cel
4	2	S173	104.cel
5	12	S173	1360.cel
6	31	S173	1869RR.cel
7	36	S172 S173	222.cel
8	28	S172 S173	1780.cel
9	10	S172 S173	1317.cel
10	39	S172 S173	246.cel
11	1	S172 S173	100R.cel
12	32	S172 S173	190.cel
13	16	S171 S172 S173	1453.cel
14	60	S171 S172 S173	461.cel
15	15	S171 S172 S173	1437.cel
16	80	S171 S172 S173	93.cel
17	14	S172 S173	1430.cel
18	4	S172 S173	1076.cel
19	13	S172 S173	1399.cel
20	18	S172 S173	148.cel
21	21	S172 S173	1553.cel
22	22	S172 S173	155R.cel
23	20	S172 S173	15.cel
24	76	S172 S173	80.cel
25	41	S172 S173	269.cel
26	42	S172 S173	274.cel
27	30	S172 S173	1854R.cel
28	81	S172 S173	94bis.cel
29	24	S172 S173	159.cel
30	47	S172 S173	300.cel
31	27	S172 S173	1622R.cel
32	77	S172 S173	83.cel
33	52	S172 S173	349.cel
34	53	S172 S173	356bis.cel
35	68	S172 S173	563.cel
36	69	S172 S173	566.cel
37	40	S172 S173	254.cel
38	70	S172 S173	57.cel
39	9	S172 S173	1308.cel
40	35	S172 S173	218.cel
41	17	S172 S173	147.cel
42	37	S172 S173	236.cel
43	79	S172 S173	90.cel
44	38	S172 S173	242.cel
45	45	S172 S173	288.cel
46	25	S172 S173	161.cel
47	46	S172 S173	30.cel
48	19	S172 S173	1497R.cel
49	50	S172 S173	344.cel
50	59	S172 S173	458.cel
51	6	S172 S173	1284.cel
52	67	S172 S173	558.cel
53	43	S172 S173	283.cel
54	26	S172 S173	1621.cel
55	57	S172 S173	428.cel
56	61	S172 S173	506.cel
57	71	S172 S173	574.cel
58	74	S172 S173	65R.cel
59	82	S172 S173	97.cel
60	56	S172 S173	396.cel
61	84	S172 S173	ge205.cel
62	49	S172 S173	328.cel
63	33	S172 S173	211.cel
64	23	S172 S173	157.cel
65	51	S172 S173	345.cel
66	62	S172 S173	527.cel
67	55	S172 S173	390.cel
68	58	S172 S173	444.cel
69	44	S172 S173	284.cel
70	54	S173	360.cel
71	7	S173	129.cel
72	11	S173	1357.cel
73	29	S173	1795R.cel
74	78	S173	84.cel
75	83	S173	ge197.cel
76	48	S173	323.cel
77	5	S173	12.cel
78	3	S173	106.cel
79	65	S173	547.cel
80	75	S173	70.cel
81	66	S173	55.cel
82	63		528bis.cel
83	64		534.cel
84	73		63.cel

Genes Names

1	6	205741_s_at	DTNA Chr:18q12
2	8	207443_at	NR2E1 Chr:6q21
3	18	217678_at	SLC7A11 Chr:4q28-q32
4	11	209921_at	SLC7A11 Chr:4q28-q32
5	5	205363_at	BBOX1 Chr:11p14.2
6	3	204041_at	MAOB Chr:xp11.23
7	10	209301_at	CA2 Chr:8q22
8	12	210066_s_at	AQP4 Chr:18q11.2-q12.1
9	13	210067_at	AQP4 Chr:18q11.2-q12.1
10	2	203723_at	ITPKB Chr:1q42.13
11	4	204363_at	F3 Chr:1p22-p21
12	7	206022_at	NDP Chr:xp11.4
13	14	210068_s_at	AQP4 Chr:18q11.2-q12.1
14	15	210906_x_at	AQP4 Chr:18q11.2-q12.1
15	1	202800_at	SLC1A3 Chr:5p13
16	16	213395_at	MLC1 Chr:22q13.33
17	17	213618_at	CENTD1 Chr:4p15.1
18	9	207455_at	P2RY1 Chr:3q25.2
19	23	231925_at	--- ---
20	25	238003_at	FLJ25530 Chr:11q24.2
21	19	223605_at	SLC25A18 Chr:22q11.2
22	21	226228_at	AQP4 Chr:18q11.2-q12.1
23	20	226189_at	--- ---
24	22	227084_at	DTNA Chr:18q12
25	24	235795_at	PAX6 Chr:11p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	19
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 10:03:48

S1_using_G18

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=19)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC