S1_using_G16

Super-paramagnetic Clustering of 84 points in a 49 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	2		104.cel
2	21	S154 S163	1553.cel
3	18	S154 S163	148.cel
4	4	S154 S163	1076.cel
5	28	S154 S163	1780.cel
6	20	S162 S163	15.cel
7	76	S162 S163	80.cel
8	80	S162 S163	93.cel
9	29	S161 S162 S163	1795R.cel
10	10	S160 S161 S162 S163	1317.cel
11	11	S160 S161 S162 S163	1357.cel
12	83	S156 S160 S161 S162 S163	ge197.cel
13	78	S156 S160 S161 S162 S163	84.cel
14	48	S156 S160 S161 S162 S163	323.cel
15	22	S156 S160 S161 S162 S163	155R.cel
16	84	S159 S160 S161 S162 S163	ge205.cel
17	9	S159 S160 S161 S162 S163	1308.cel
18	40	S159 S160 S161 S162 S163	254.cel
19	54	S159 S160 S161 S162 S163	360.cel
20	39	S155 S159 S160 S161 S162 S163	246.cel
21	41	S155 S159 S160 S161 S162 S163	269.cel
22	27	S155 S159 S160 S161 S162 S163	1622R.cel
23	12	S155 S159 S160 S161 S162 S163	1360.cel
24	45	S155 S159 S160 S161 S162 S163	288.cel
25	74	S155 S159 S160 S161 S162 S163	65R.cel
26	32	S155 S159 S160 S161 S162 S163	190.cel
27	43	S155 S159 S160 S161 S162 S163	283.cel
28	6	S159 S160 S161 S162 S163	1284.cel
29	17	S159 S160 S161 S162 S163	147.cel
30	35	S159 S160 S161 S162 S163	218.cel
31	57	S159 S160 S161 S162 S163	428.cel
32	61	S159 S160 S161 S162 S163	506.cel
33	69	S159 S160 S161 S162 S163	566.cel
34	42	S159 S160 S161 S162 S163	274.cel
35	70	S159 S160 S161 S162 S163	57.cel
36	81	S159 S160 S161 S162 S163	94bis.cel
37	36	S159 S160 S161 S162 S163	222.cel
38	30	S159 S160 S161 S162 S163	1854R.cel
39	79	S157 S159 S160 S161 S162 S163	90.cel
40	5	S157 S159 S160 S161 S162 S163	12.cel
41	14	S157 S159 S160 S161 S162 S163	1430.cel
42	52	S157 S159 S160 S161 S162 S163	349.cel
43	49	S157 S159 S160 S161 S162 S163	328.cel
44	44	S157 S159 S160 S161 S162 S163	284.cel
45	23	S157 S159 S160 S161 S162 S163	157.cel
46	46	S157 S159 S160 S161 S162 S163	30.cel
47	13	S157 S159 S160 S161 S162 S163	1399.cel
48	75	S157 S159 S160 S161 S162 S163	70.cel
49	24	S157 S159 S160 S161 S162 S163	159.cel
50	38	S157 S159 S160 S161 S162 S163	242.cel
51	59	S157 S159 S160 S161 S162 S163	458.cel
52	16	S157 S159 S160 S161 S162 S163	1453.cel
53	25	S157 S159 S160 S161 S162 S163	161.cel
54	33	S157 S159 S160 S161 S162 S163	211.cel
55	47	S157 S159 S160 S161 S162 S163	300.cel
56	50	S157 S159 S160 S161 S162 S163	344.cel
57	58	S157 S159 S160 S161 S162 S163	444.cel
58	62	S157 S159 S160 S161 S162 S163	527.cel
59	77	S157 S159 S160 S161 S162 S163	83.cel
60	82	S157 S159 S160 S161 S162 S163	97.cel
61	66	S157 S159 S160 S161 S162 S163	55.cel
62	68	S159 S160 S161 S162 S163	563.cel
63	26	S159 S160 S161 S162 S163	1621.cel
64	19	S159 S160 S161 S162 S163	1497R.cel
65	56	S159 S160 S161 S162 S163	396.cel
66	63	S159 S160 S161 S162 S163	528bis.cel
67	71	S159 S160 S161 S162 S163	574.cel
68	8	S159 S160 S161 S162 S163	1297.cel
69	3	S159 S160 S161 S162 S163	106.cel
70	37	S159 S160 S161 S162 S163	236.cel
71	60	S159 S160 S161 S162 S163	461.cel
72	64	S159 S160 S161 S162 S163	534.cel
73	7	S159 S160 S161 S162 S163	129.cel
74	53	S159 S160 S161 S162 S163	356bis.cel
75	1	S160 S161 S162 S163	100R.cel
76	51	S158 S160 S161 S162 S163	345.cel
77	55	S158 S160 S161 S162 S163	390.cel
78	15	S158 S160 S161 S162 S163	1437.cel
79	67	S158 S160 S161 S162 S163	558.cel
80	31	S161 S162 S163	1869RR.cel
81	65	S161 S162 S163	547.cel
82	34		212R.cel
83	72		57R.cel
84	73		63.cel

Genes Names

1	15	209291_at	ID4 Chr:6p22-p21
2	16	209292_at	ID4 Chr:6p22-p21
3	41	226933_s_at	ID4 Chr:6p22-p21
4	5	203632_s_at	GPRC5B Chr:16p12
5	14	209170_s_at	GPM6B Chr:xp22.2
6	19	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
7	11	209167_at	GPM6B Chr:Xp22.2
8	12	209168_at	GPM6B Chr:xp22.2
9	3	203540_at	GFAP Chr:17q21
10	13	209169_at	GPM6B Chr:xp22.2
11	23	209686_at	S100B Chr:21q22.3
12	34	218087_s_at	SORBS1 Chr:10q23.3-q24.1
13	35	218899_s_at	BAALC Chr:8q22.3
14	36	222780_s_at	BAALC Chr:8q22.3
15	4	203562_at	FEZ1 Chr:11q24.2
16	47	231898_x_at	SOX2OT Chr:3q26.3-q27
17	32	216033_s_at	FYN Chr:6q21
18	28	212486_s_at	FYN Chr:6q21
19	8	205433_at	BCHE Chr:3q26.1-q26.2
20	6	204469_at	PTPRZ1 Chr:7q31.3
21	10	206826_at	PMP2 Chr:8q21.3-q22.1
22	48	235127_at	PMP2 Chr:8q21.3-q22.1
23	9	205475_at	SCRG1 Chr:4q31-q32
24	24	209859_at	TRIM9 Chr:14q22.1
25	25	211596_s_at	LRIG1 Chr:3p14
26	27	212070_at	GPR56 Chr:16q13
27	31	214023_x_at	MGC8685 Chr:6p25
28	49	44783_s_at	HEY1 Chr:8q21
29	26	212062_at	ATP9A Chr:20q13.11-q13.2
30	30	213849_s_at	PPP2R2B Chr:5q31-5q32
31	20	209598_at	PNMA2 Chr:8p21.1
32	39	225491_at	SLC1A2 Chr:11p13-p12
33	40	226627_at	38238 Chr:5q31
34	1	1555471_a_at	FMN2 Chr:1q43
35	38	223618_at	FMN2 Chr:1q43
36	2	202986_at	ARNT2 Chr:15q24
37	21	209617_s_at	CTNND2 Chr:5p15.2
38	22	209618_at	CTNND2 Chr:5p15.2
39	18	209470_s_at	GPM6A Chr:4q34
40	43	228546_at	DPP6 Chr:7q36.2-q36.3
41	17	209469_at	GPM6A Chr:4q34
42	46	229053_at	LOC51760 Chr:16p13.11
43	42	228375_at	IGSF11 Chr:3q13.33
44	44	228581_at	KCNJ10 Chr:1q22-q23
45	45	228780_at	POU3F3 Chr:2q12.1
46	37	222803_at	PRTFDC1 Chr:10p12.31
47	7	204471_at	GAP43 Chr:3q13.1-q13.2
48	33	216963_s_at	GAP43 Chr:3q13.1-q13.2
49	29	213721_at	SOX2 Chr:3q26.3-q27

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 09:39:46

S1_using_G16

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC