S1_using_G15

Super-paramagnetic Clustering of 84 points in a 108 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	78	S142	84.cel
2	40	S142	254.cel
3	45	S142	288.cel
4	83	S142	ge197.cel
5	22		155R.cel
6	48		323.cel
7	66	S143 S152 S153	55.cel
8	8	S143 S152 S153	1297.cel
9	72	S143 S152 S153	57R.cel
10	41	S143 S152 S153	269.cel
11	35	S147 S152 S153	218.cel
12	2	S147 S152 S153	104.cel
13	28	S147 S152 S153	1780.cel
14	38	S147 S152 S153	242.cel
15	23	S147 S152 S153	157.cel
16	24	S153	159.cel
17	42	S153	274.cel
18	54	S153	360.cel
19	57	S144 S153	428.cel
20	69	S144 S153	566.cel
21	50	S144 S153	344.cel
22	12	S144 S153	1360.cel
23	7	S153	129.cel
24	64	S153	534.cel
25	82	S153	97.cel
26	49	S141 S153	328.cel
27	77	S141 S153	83.cel
28	71	S141 S153	574.cel
29	68	S141 S153	563.cel
30	56	S141 S153	396.cel
31	36	S141 S153	222.cel
32	79	S141 S153	90.cel
33	62	S153	527.cel
34	21	S153	1553.cel
35	20	S153	15.cel
36	4	S153	1076.cel
37	33	S153	211.cel
38	59	S153	458.cel
39	44	S153	284.cel
40	51	S153	345.cel
41	80	S153	93.cel
42	15	S153	1437.cel
43	34	S153	212R.cel
44	1	S153	100R.cel
45	25	S153	161.cel
46	14	S153	1430.cel
47	60	S153	461.cel
48	26	S153	1621.cel
49	65	S153	547.cel
50	3	S153	106.cel
51	6	S153	1284.cel
52	32	S153	190.cel
53	43	S153	283.cel
54	73	S151 S153	63.cel
55	39	S151 S153	246.cel
56	84	S151 S153	ge205.cel
57	31	S151 S153	1869RR.cel
58	27	S151 S153	1622R.cel
59	47	S151 S153	300.cel
60	46	S145 S151 S153	30.cel
61	55	S145 S151 S153	390.cel
62	61	S145 S151 S153	506.cel
63	58	S145 S151 S153	444.cel
64	67	S145 S151 S153	558.cel
65	9	S148 S153	1308.cel
66	29	S148 S153	1795R.cel
67	11	S148 S153	1357.cel
68	76	S148 S153	80.cel
69	53	S153	356bis.cel
70	52	S153	349.cel
71	10	S153	1317.cel
72	17	S146 S150 S153	147.cel
73	18	S146 S150 S153	148.cel
74	5	S146 S150 S153	12.cel
75	13	S146 S150 S153	1399.cel
76	81	S146 S150 S153	94bis.cel
77	16	S150 S153	1453.cel
78	70	S153	57.cel
79	19	S153	1497R.cel
80	30	S153	1854R.cel
81	75	S149 S153	70.cel
82	74	S149 S153	65R.cel
83	63	S149 S153	528bis.cel
84	37	S149 S153	236.cel

Genes Names

1	77	218854_at	SART2 Chr:6q22
2	24	203561_at	FCGR2A Chr:1q23
3	72	217388_s_at	KYNU Chr:2q22.3
4	13	201743_at	CD14 Chr:5q31.1
5	54	211429_s_at	--- ---
6	10	201422_at	IFI30 Chr:19p13.1
7	43	206584_at	LY96 Chr:8q13.3
8	38	204971_at	CSTA Chr:3q21
9	79	219607_s_at	MS4A4A Chr:11q12
10	14	202546_at	VAMP8 Chr:2p12-p11.2
11	86	223280_x_at	MS4A6A Chr:11q12.1
12	89	224356_x_at	MS4A6A Chr:11q12.1
13	16	202833_s_at	SERPINA1 Chr:14q32.1
14	30	204174_at	ALOX5AP Chr:13q12
15	104	230550_at	MS4A6A Chr:11q12.1
16	78	219386_s_at	SLAMF8 Chr:1q23.1
17	11	201487_at	CTSC Chr:11q14.1-q14.3
18	80	219666_at	MS4A6A Chr:11q12.1
19	31	204232_at	FCER1G Chr:1q23
20	51	210176_at	TLR1 Chr:4p14
21	67	214770_at	MSR1 Chr:8p22
22	6	1554899_s_at	FCER1G Chr:1q23
23	15	202803_s_at	ITGB2 Chr:21q22.3
24	8	1555728_a_at	MS4A4A Chr:11q12
25	19	202953_at	C1QB Chr:1p36.3-p34.1
26	76	218232_at	C1QA Chr:1p36.3-p34.1
27	64	213566_at	RNASE6 Chr:14q11.2
28	90	225353_s_at	C1QG Chr:1p36.11
29	60	212588_at	PTPRC Chr:1q31-q32
30	7	1555349_a_at	ITGB2 Chr:21q22.3
31	37	204959_at	MNDA Chr:1q22
32	27	204007_at	FCGR3A Chr:1q23
33	12	201721_s_at	LAPTM5 Chr:1p34
34	35	204787_at	Z39IG Chr:xq12-q13.3
35	28	204122_at	TYROBP Chr:19q13.1
36	17	202901_x_at	CTSS Chr:1q21
37	41	206111_at	RNASE2 Chr:14q24-q31
38	98	228532_at	MGC24133 Chr:1p13.2
39	65	214467_at	GPR65 Chr:14q31-q32.1
40	26	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	45	208018_s_at	HCK Chr:20q11-q12
43	106	232617_at	CTSS Chr:1q21
44	20	202957_at	HCLS1 Chr:3q13
45	18	202902_s_at	CTSS Chr:1q21
46	33	204446_s_at	ALOX5 Chr:10q11.2
47	99	229560_at	TLR8 Chr:xp22
48	39	205786_s_at	ITGAM Chr:16p11.2
49	82	220330_s_at	SAMSN1 Chr:21q11
50	96	227266_s_at	FYB Chr:5p13.1
51	85	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	23	203416_at	CD53 Chr:1p13
53	101	229937_x_at	LILRB1 Chr:19q13.4
54	71	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	52	210314_x_at	TNFSF13 Chr:17p13.1
56	5	1552807_a_at	SIGLEC10 Chr:19q13.3
57	94	226068_at	SYK Chr:9q22
58	91	225502_at	DOCK8 Chr:9p24.3
59	75	217983_s_at	RNASET2 Chr:6q27
60	21	203104_at	CSF1R Chr:5q33-q35
61	107	232843_s_at	DOCK8 Chr:9p24.3
62	66	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	97	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	73	217478_s_at	HLA-DMA Chr:6p21.3
65	48	209312_x_at	HLA-DRB1 Chr:6p21.3
66	53	210982_s_at	HLA-DRA Chr:6p21.3
67	69	215193_x_at	HLA-DRB3 Chr:6p21.3
68	46	208306_x_at	HLA-DRB3 Chr:6p21.3
69	47	208894_at	HLA-DRA Chr:6p21.3
70	34	204670_x_at	HLA-DRB3 Chr:6p21.3
71	49	209619_at	CD74 Chr:5q32
72	62	212998_x_at	HLA-DQB1 Chr:6p21.3
73	55	211654_x_at	HLA-DQB1 Chr:6p21.3
74	59	211991_s_at	HLA-DPA1 Chr:6p21.3
75	87	223343_at	MS4A7 Chr:11q12
76	9	201137_s_at	HLA-DPB1 Chr:6p21.3
77	56	211656_x_at	HLA-DQB1 Chr:6p21.3
78	50	209823_x_at	HLA-DQB1 Chr:6p21.3
79	4	1552386_at	FLJ33641 Chr:5q12.1
80	63	213537_at	HLA-DPA1 Chr:6p21.3
81	61	212671_s_at	HLA-DQA1 Chr:6p21.3
82	95	227265_at	--- ---
83	58	211990_at	HLA-DPA1 Chr:6p21.3
84	103	230391_at	--- ---
85	81	220146_at	TLR7 Chr:xp22.3
86	40	205997_at	ADAM28 Chr:8p21.2
87	88	223620_at	GPR34 Chr:xp11.4-p11.3
88	57	211742_s_at	EVI2B Chr:17q11.2
89	100	229723_at	TAGAP Chr:6q25.3
90	29	204150_at	STAB1 Chr:3p21.31
91	108	38487_at	STAB1 Chr:3p21.31
92	102	230252_at	GPR92 Chr:12p13.31
93	42	206420_at	IGSF6 Chr:16p12-p13
94	105	230925_at	APBB1IP Chr:10p12.2
95	25	203645_s_at	CD163 Chr:12p13.3
96	68	215049_x_at	CD163 Chr:12p13.3
97	84	221210_s_at	NPL Chr:1q25
98	22	203305_at	F13A1 Chr:6p25.3-p24.3
99	92	225646_at	CTSC Chr:11q14.1-q14.3
100	93	225647_s_at	CTSC Chr:11q14.1-q14.3
101	2	1552365_at	SCIN Chr:7p21.3
102	32	204430_s_at	SLC2A5 Chr:1p36.2
103	44	207655_s_at	BLNK Chr:10q23.2-q23.33
104	70	216233_at	CD163 Chr:12p13.3
105	3	1552367_a_at	SCIN Chr:7p21.3
106	36	204834_at	FGL2 Chr:7q11.23
107	74	217767_at	C3 Chr:19p13.3-p13.2
108	83	220532_s_at	LR8 Chr:7q36.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	3
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 09:23:24

S1_using_G15

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC