S1_using_G14

Super-paramagnetic Clustering of 84 points in a 26 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	8	S140	1297.cel
2	2	S140	104.cel
3	31	S140	1869RR.cel
4	11	S140	1357.cel
5	4	S140	1076.cel
6	18	S140	148.cel
7	21	S140	1553.cel
8	28	S140	1780.cel
9	22	S140	155R.cel
10	1	S140	100R.cel
11	3	S136 S138 S140	106.cel
12	14	S135 S136 S138 S140	1430.cel
13	84	S134 S135 S136 S138 S140	ge205.cel
14	64	S134 S135 S136 S138 S140	534.cel
15	79	S134 S135 S136 S138 S140	90.cel
16	58	S134 S135 S136 S138 S140	444.cel
17	23	S134 S135 S136 S138 S140	157.cel
18	13	S134 S135 S136 S138 S140	1399.cel
19	29	S134 S135 S136 S138 S140	1795R.cel
20	33	S134 S135 S136 S138 S140	211.cel
21	46	S134 S135 S136 S138 S140	30.cel
22	24	S134 S135 S136 S138 S140	159.cel
23	56	S134 S135 S136 S138 S140	396.cel
24	59	S134 S135 S136 S138 S140	458.cel
25	10	S134 S135 S136 S138 S140	1317.cel
26	37	S134 S135 S136 S138 S140	236.cel
27	57	S134 S135 S136 S138 S140	428.cel
28	66	S134 S135 S136 S138 S140	55.cel
29	76	S134 S135 S136 S138 S140	80.cel
30	81	S134 S135 S136 S138 S140	94bis.cel
31	5	S134 S135 S136 S138 S140	12.cel
32	52	S134 S135 S136 S138 S140	349.cel
33	7	S134 S135 S136 S138 S140	129.cel
34	9	S134 S135 S136 S138 S140	1308.cel
35	20	S134 S135 S136 S138 S140	15.cel
36	35	S134 S135 S136 S138 S140	218.cel
37	25	S134 S135 S136 S138 S140	161.cel
38	15	S134 S135 S136 S138 S140	1437.cel
39	27	S134 S135 S136 S138 S140	1622R.cel
40	38	S134 S135 S136 S138 S140	242.cel
41	53	S134 S135 S136 S138 S140	356bis.cel
42	36	S134 S135 S136 S138 S140	222.cel
43	55	S134 S135 S136 S138 S140	390.cel
44	26	S134 S135 S136 S138 S140	1621.cel
45	51	S134 S135 S136 S138 S140	345.cel
46	71	S134 S135 S136 S138 S140	574.cel
47	47	S134 S135 S136 S138 S140	300.cel
48	43	S135 S136 S138 S140	283.cel
49	68	S135 S136 S138 S140	563.cel
50	49	S135 S136 S138 S140	328.cel
51	61	S136 S138 S140	506.cel
52	62	S136 S138 S140	527.cel
53	45	S136 S138 S140	288.cel
54	12	S136 S138 S140	1360.cel
55	67	S136 S138 S140	558.cel
56	74	S136 S138 S140	65R.cel
57	40	S136 S138 S140	254.cel
58	83	S136 S138 S140	ge197.cel
59	80	S138 S140	93.cel
60	41	S140	269.cel
61	32	S140	190.cel
62	60	S140	461.cel
63	54	S140	360.cel
64	77	S140	83.cel
65	19	S140	1497R.cel
66	82	S140	97.cel
67	65	S140	547.cel
68	16	S140	1453.cel
69	17	S137 S139 S140	147.cel
70	42	S137 S139 S140	274.cel
71	6	S137 S139 S140	1284.cel
72	70	S137 S139 S140	57.cel
73	50	S139 S140	344.cel
74	69	S140	566.cel
75	30	S140	1854R.cel
76	48	S140	323.cel
77	75	S140	70.cel
78	44	S140	284.cel
79	78	S140	84.cel
80	63		528bis.cel
81	73		63.cel
82	34		212R.cel
83	39		246.cel
84	72		57R.cel

Genes Names

1	1	203180_at	ALDH1A3 Chr:15q26.3
2	2	203434_s_at	MME Chr:3q25.1-q25.2
3	6	205619_s_at	MEOX1 Chr:17q21
4	21	231766_s_at	COL12A1 Chr:6q12-q13
5	5	205431_s_at	BMP5 Chr:6p12.1
6	3	204776_at	THBS4 Chr:5q13
7	4	205430_at	BMP5 Chr:6p12.1
8	7	205713_s_at	COMP Chr:19p13.1
9	24	236035_at	--- ---
10	8	205848_at	GAS2 Chr:11p14.3-p15.2
11	12	218499_at	MST4 Chr:xq26.2
12	23	235944_at	FIBL-6 Chr:1q25.3
13	9	212414_s_at	38236 Chr:xq25
14	10	213456_at	SOSTDC1 Chr:7p21.2
15	25	239468_at	C10orf48 Chr:10p12.1
16	26	244885_at	EBF2 Chr:8p21.2
17	14	220014_at	LOC51334 Chr:5q23.2
18	15	220065_at	TNMD Chr:xq21.33-q23
19	16	226834_at	ASAM Chr:11q24.1
20	22	232090_at	--- ---
21	13	219837_s_at	C17 Chr:4p16-p15
22	17	226930_at	FNDC1 Chr:6q25
23	18	227070_at	LOC83468 Chr:12q
24	11	217525_at	UNQ564 Chr:11p15.4
25	19	227850_x_at	CDC42EP5 Chr:19q13.42
26	20	229839_at	MGC45780 Chr:8p21.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	13
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 09:09:44

S1_using_G14

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC