S1_using_G13

Super-paramagnetic Clustering of 84 points in a 39 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	19		1497R.cel
2	18	S129 S133	148.cel
3	21	S129 S133	1553.cel
4	4	S129 S133	1076.cel
5	28	S129 S133	1780.cel
6	10	S132 S133	1317.cel
7	22	S131 S132 S133	155R.cel
8	2	S131 S132 S133	104.cel
9	12	S131 S132 S133	1360.cel
10	35	S131 S132 S133	218.cel
11	38	S131 S132 S133	242.cel
12	11	S130 S131 S132 S133	1357.cel
13	29	S130 S131 S132 S133	1795R.cel
14	31	S130 S131 S132 S133	1869RR.cel
15	23	S130 S131 S132 S133	157.cel
16	27	S130 S131 S132 S133	1622R.cel
17	37	S130 S131 S132 S133	236.cel
18	9	S130 S131 S132 S133	1308.cel
19	15	S130 S131 S132 S133	1437.cel
20	16	S130 S131 S132 S133	1453.cel
21	1	S130 S131 S132 S133	100R.cel
22	25	S130 S131 S132 S133	161.cel
23	59	S130 S131 S132 S133	458.cel
24	49	S130 S131 S132 S133	328.cel
25	7	S130 S131 S132 S133	129.cel
26	32	S130 S131 S132 S133	190.cel
27	41	S130 S131 S132 S133	269.cel
28	46	S130 S131 S132 S133	30.cel
29	53	S130 S131 S132 S133	356bis.cel
30	36	S130 S131 S132 S133	222.cel
31	56	S130 S131 S132 S133	396.cel
32	66	S130 S131 S132 S133	55.cel
33	24	S130 S131 S132 S133	159.cel
34	39	S130 S131 S132 S133	246.cel
35	30	S130 S131 S132 S133	1854R.cel
36	13	S130 S131 S132 S133	1399.cel
37	17	S130 S131 S132 S133	147.cel
38	26	S130 S131 S132 S133	1621.cel
39	34	S130 S131 S132 S133	212R.cel
40	79	S130 S131 S132 S133	90.cel
41	51	S130 S131 S132 S133	345.cel
42	55	S130 S131 S132 S133	390.cel
43	33	S130 S131 S132 S133	211.cel
44	60	S130 S131 S132 S133	461.cel
45	78	S130 S131 S132 S133	84.cel
46	75	S130 S131 S132 S133	70.cel
47	50	S130 S131 S132 S133	344.cel
48	6	S130 S131 S132 S133	1284.cel
49	57	S130 S131 S132 S133	428.cel
50	63	S130 S131 S132 S133	528bis.cel
51	81	S130 S131 S132 S133	94bis.cel
52	67	S130 S131 S132 S133	558.cel
53	65	S130 S131 S132 S133	547.cel
54	83	S130 S131 S132 S133	ge197.cel
55	64	S130 S131 S132 S133	534.cel
56	84	S130 S131 S132 S133	ge205.cel
57	8	S130 S131 S132 S133	1297.cel
58	54	S130 S131 S132 S133	360.cel
59	48	S130 S131 S132 S133	323.cel
60	70	S130 S131 S132 S133	57.cel
61	72	S130 S131 S132 S133	57R.cel
62	69	S131 S132 S133	566.cel
63	43	S131 S132 S133	283.cel
64	62	S131 S132 S133	527.cel
65	74	S131 S132 S133	65R.cel
66	80	S131 S132 S133	93.cel
67	40	S133	254.cel
68	45	S133	288.cel
69	58	S133	444.cel
70	61	S133	506.cel
71	82		97.cel
72	77		83.cel
73	42		274.cel
74	20		15.cel
75	52		349.cel
76	5		12.cel
77	44		284.cel
78	14		1430.cel
79	76		80.cel
80	68		563.cel
81	47		300.cel
82	71		574.cel
83	3		106.cel
84	73		63.cel

Genes Names

1	4	201131_s_at	CDH1 Chr:16q22.1
2	12	206100_at	CPM Chr:12q14.3
3	5	202246_s_at	CDK4 Chr:12q14
4	6	203226_s_at	SAS Chr:12q13.3
5	7	203227_s_at	SAS Chr:12q13.3
6	1	1555385_at	GALGT Chr:12q13.3
7	19	214951_at	SLC26A10 Chr:12q13
8	13	206435_at	GALGT Chr:12q13.3
9	3	200714_x_at	OS-9 Chr:12q13
10	20	215399_s_at	OS-9 Chr:12q13
11	15	212656_at	TSFM Chr:12q13-q14
12	17	214331_at	TSFM Chr:12q13-q14
13	18	214332_s_at	TSFM Chr:12q13-q14
14	2	1568706_s_at	--- ---
15	10	205539_at	AVIL Chr:12q13.2
16	27	226546_at	--- ---
17	36	238999_at	--- ---
18	14	211832_s_at	MDM2 Chr:12q14.3-q15
19	21	217373_x_at	MDM2 Chr:12q14.3-q15
20	22	217542_at	MGC5370 Chr:12q14.3
21	9	205386_s_at	MDM2 Chr:12q14.3-q15
22	25	225160_x_at	MGC5370 Chr:12q14.3
23	29	229711_s_at	MGC5370 Chr:12q14.3
24	35	238733_at	--- ---
25	23	218768_at	NUP107 Chr:12q14.3
26	28	227678_at	KUB3 Chr:12q13.2
27	37	241765_at	CPM Chr:12q14.3
28	8	204027_s_at	METTL1 Chr:12q13
29	11	205676_at	CYP27B1 Chr:12q13.1-q13.3
30	16	213861_s_at	DKFZP586D0919 Chr:12q13.2
31	26	226454_at	LOC92979 Chr:12q13.2
32	30	229917_at	--- ---
33	31	230001_at	LOC92979 Chr:12q13.2
34	34	235721_at	DTX3 Chr:12q13.2
35	38	244675_at	RGS8 Chr:1q25
36	32	235019_at	CPM Chr:12q14.3
37	33	235706_at	CPM Chr:12q14.3
38	24	224489_at	LOC284058 Chr:17q21.32
39	39	AFFX-M27830_5_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	15
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 08:56:19

S1_using_G13

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC