S1_using_G12

Super-paramagnetic Clustering of 84 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18	S127	148.cel
2	4	S127	1076.cel
3	8	S127	1297.cel
4	21	S127	1553.cel
5	28	S127	1780.cel
6	64	S127	534.cel
7	66	S127	55.cel
8	20	S127	15.cel
9	76	S127	80.cel
10	19	S128	1497R.cel
11	25	S128	161.cel
12	7	S126 S128	129.cel
13	11	S126 S128	1357.cel
14	29	S126 S128	1795R.cel
15	15	S126 S128	1437.cel
16	24	S126 S128	159.cel
17	35	S126 S128	218.cel
18	43	S126 S128	283.cel
19	12	S126 S128	1360.cel
20	10	S126 S128	1317.cel
21	23	S126 S128	157.cel
22	38	S126 S128	242.cel
23	9	S126 S128	1308.cel
24	32	S126 S128	190.cel
25	41	S126 S128	269.cel
26	45	S126 S128	288.cel
27	37	S126 S128	236.cel
28	78	S126 S128	84.cel
29	50	S126 S128	344.cel
30	40	S126 S128	254.cel
31	2	S126 S128	104.cel
32	16	S126 S128	1453.cel
33	22	S126 S128	155R.cel
34	6	S126 S128	1284.cel
35	36	S126 S128	222.cel
36	48	S126 S128	323.cel
37	56	S126 S128	396.cel
38	26	S126 S128	1621.cel
39	1	S126 S128	100R.cel
40	39	S126 S128	246.cel
41	54	S126 S128	360.cel
42	33	S126 S128	211.cel
43	55	S126 S128	390.cel
44	75	S126 S128	70.cel
45	57	S126 S128	428.cel
46	59	S126 S128	458.cel
47	63	S126 S128	528bis.cel
48	61	S126 S128	506.cel
49	67	S126 S128	558.cel
50	46	S126 S128	30.cel
51	62	S126 S128	527.cel
52	14	S125 S126 S128	1430.cel
53	13	S125 S126 S128	1399.cel
54	80	S125 S126 S128	93.cel
55	51	S125 S126 S128	345.cel
56	49	S125 S126 S128	328.cel
57	70	S125 S126 S128	57.cel
58	65	S126 S128	547.cel
59	5	S126 S128	12.cel
60	44	S126 S128	284.cel
61	71	S126 S128	574.cel
62	68	S126 S128	563.cel
63	77	S126 S128	83.cel
64	3	S126 S128	106.cel
65	84	S126 S128	ge205.cel
66	17	S126 S128	147.cel
67	69	S126 S128	566.cel
68	79	S126 S128	90.cel
69	73	S126 S128	63.cel
70	27	S126 S128	1622R.cel
71	30	S126 S128	1854R.cel
72	81	S126 S128	94bis.cel
73	74	S126 S128	65R.cel
74	82	S126 S128	97.cel
75	53	S126 S128	356bis.cel
76	34	S126 S128	212R.cel
77	72	S126 S128	57R.cel
78	31	S126 S128	1869RR.cel
79	47	S126 S128	300.cel
80	52	S126 S128	349.cel
81	42	S126 S128	274.cel
82	58	S126 S128	444.cel
83	83	S126 S128	ge197.cel
84	60	S126 S128	461.cel

Genes Names

1	56	225415_at	BBAP Chr:3q21.1
2	53	223220_s_at	BAL Chr:3q13-q21
3	63	228531_at	FLJ20073 Chr:7q21.3
4	33	209417_s_at	IFI35 Chr:17q21
5	16	203148_s_at	TRIM14 Chr:9q31.1
6	62	228152_s_at	FLJ31033 Chr:4q32.3
7	42	214453_s_at	IFI44 Chr:1p31.1
8	47	218986_s_at	FLJ20035 Chr:4q32.3
9	45	218543_s_at	ZC3HDC1 Chr:7q34
10	70	232375_at	--- ---
11	48	219209_at	MDA5 Chr:2p24.3-q24.3
12	46	218943_s_at	DDX58 Chr:9p12
13	3	200887_s_at	STAT1 Chr:2q32.2
14	79	AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
15	80	AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
16	35	209969_s_at	STAT1 Chr:2q32.2
17	51	219684_at	IFRG28 Chr:3q28
18	27	205552_s_at	OAS1 Chr:12q24.1
19	52	219863_at	CEB1 Chr:4q22.1-q23
20	71	235157_at	--- ---
21	44	218400_at	OAS3 Chr:12q24.2
22	25	204994_at	MX2 Chr:21q22.3
23	24	204972_at	OAS2 Chr:12q24.2
24	64	228607_at	OAS2 Chr:12q24.2
25	6	202086_at	MX1 Chr:21q22.3
26	23	204439_at	C1orf29 Chr:1p31.1
27	15	202869_at	OAS1 Chr:12q24.1
28	26	205483_s_at	G1P2 Chr:1p36.33
29	72	235276_at	EPSTI1 Chr:13q13.3
30	40	213797_at	cig5 Chr:2p25.2
31	49	219211_at	USP18 Chr:22q11.21
32	22	204415_at	G1P3 Chr:1p35
33	10	202411_at	IFI27 Chr:14q32
34	76	242625_at	cig5 Chr:2p25.2
35	59	226702_at	LOC129607 Chr:2p25.2
36	66	229450_at	IFIT4 Chr:10q24
37	50	219352_at	FLJ20637 Chr:4q22.1
38	60	226757_at	IFIT2 Chr:10q23-q25
39	17	203153_at	IFIT1 Chr:10q25-q26
40	58	226603_at	FLJ39885 Chr:7q21.3
41	67	230036_at	FLJ39885 Chr:7q21.3
42	18	203964_at	NMI Chr:2p24.3-q21.3
43	57	226474_at	NOD27 Chr:16q13
44	32	209040_s_at	PSMB8 Chr:6p21.3
45	21	204279_at	PSMB9 Chr:6p21.3
46	9	202307_s_at	TAP1 Chr:6p21.3
47	78	38241_at	BTN3A3 Chr:6p21.3
48	5	201641_at	BST2 Chr:19p13.2
49	73	235643_at	FLJ39885 Chr:7q21.3
50	77	243271_at	--- ---
51	39	213293_s_at	TRIM22 Chr:11p15
52	14	202864_s_at	SP100 Chr:2q37.1
53	13	202863_at	SP100 Chr:2q37.1
54	11	202430_s_at	PLSCR1 Chr:3q23
55	12	202446_s_at	PLSCR1 Chr:3q23
56	36	210705_s_at	TRIM5 Chr:11p15
57	34	209846_s_at	BTN3A2 Chr:6p22.1
58	43	217933_s_at	LAP3 Chr:4p15.33
59	75	241916_at	PLSCR1 Chr:3q23
60	7	202269_x_at	GBP1 Chr:1p22.2
61	20	204205_at	APOBEC3G Chr:22q13.1-q13.2
62	8	202270_at	GBP1 Chr:1p22.2
63	68	231577_s_at	GBP1 Chr:1p22.2
64	38	211911_x_at	HLA-C Chr:6p21.3
65	31	208729_x_at	HLA-B Chr:6p21.3
66	37	211368_s_at	CASP1 Chr:11q23
67	19	204070_at	RARRES3 Chr:11q23
68	2	1552703_s_at	CASP1 Chr:11q23
69	4	200904_at	HLA-E Chr:6p21.3
70	1	1552701_a_at	COP Chr:11q22
71	28	206011_at	CASP1 Chr:11q23
72	69	232024_at	HIMAP2 Chr:7q36.1
73	29	206082_at	HCP5 Chr:6p21.3
74	41	214059_at	IFI44 Chr:1p31.1
75	74	239587_at	--- ---
76	65	228617_at	HSXIAPAF1 Chr:17p13.2
77	30	206133_at	HSXIAPAF1 Chr:17p13.2
78	54	223434_at	GBP3 Chr:1p22.2
79	55	225171_at	ARHGAP18 Chr:6q23.1
80	61	227458_at	PDCD1LG1 Chr:9p24

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 08:43:24

S1_using_G12

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC