S1_using_G11

Super-paramagnetic Clustering of 84 points in a 15 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=7)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples

    163 528bis.cel
    266 55.cel
    329 1795R.cel
    422 S117155R.cel
    574 S11765R.cel
    645 S117288.cel
    718 S116 S117148.cel
    821 S116 S1171553.cel
    94 S116 S1171076.cel
    1028 S116 S1171780.cel
    1144 S118 S124284.cel
    1213 S118 S1241399.cel
    1377 S118 S12483.cel
    143 S118 S124106.cel
    157 S124129.cel
    1614 S1241430.cel
    1752 S121 S124349.cel
    188 S121 S1241297.cel
    195 S121 S12412.cel
    2071 S121 S124574.cel
    2111 S121 S1241357.cel
    2247 S121 S124300.cel
    2324 S124159.cel
    2456 S120 S124396.cel
    2536 S120 S124222.cel
    2682 S120 S12497.cel
    2776 S120 S12480.cel
    2846 S12430.cel
    2930 S1241854R.cel
    3031 S1241869RR.cel
    3117 S124147.cel
    3226 S1241621.cel
    3327 S1241622R.cel
    3442 S124274.cel
    3519 S1241497R.cel
    3638 S124242.cel
    3764 S124534.cel
    3823 S124157.cel
    396 S1241284.cel
    4041 S124269.cel
    4153 S124356bis.cel
    4257 S124428.cel
    4379 S12490.cel
    4481 S12494bis.cel
    4584 S124ge205.cel
    4659 S124458.cel
    4751 S124345.cel
    489 S1241308.cel
    4962 S124527.cel
    5072 S12457R.cel
    5149 S124328.cel
    5268 S124563.cel
    5310 S1241317.cel
    5454 S124360.cel
    5537 236.cel
    5643 283.cel
    5748 323.cel
    582 S122 S123104.cel
    5916 S122 S1231453.cel
    6034 S122 S123212R.cel
    6133 S122 S123211.cel
    621 S122 S123100R.cel
    6350 S122 S123344.cel
    6455 S122 S123390.cel
    6558 S122 S123444.cel
    6667 S122 S123558.cel
    6725 S122 S123161.cel
    6869 S122 S123566.cel
    6915 S122 S1231437.cel
    7020 S122 S12315.cel
    7132 S122 S123190.cel
    7235 S122 S123218.cel
    7340 S122 S123254.cel
    7439 S122 S123246.cel
    7575 S122 S12370.cel
    7680 S122 S12393.cel
    7712 S119 S122 S1231360.cel
    7860 S119 S122 S123461.cel
    7970 S119 S122 S12357.cel
    8083 S119 S122 S123ge197.cel
    8173 S122 S12363.cel
    8278 S122 S12384.cel
    8361 S123506.cel
    8465 547.cel

    Genes Names

    18206915_atNKX2-2 Chr:20pter-q11.23
    22201416_atSOX4 Chr:6p22.3
    33201417_atSOX4 Chr:6p22.3
    411569316_at--- ---
    54204913_s_atSOX11 Chr:2p25
    65204914_s_atSOX11 Chr:2p25
    76204915_s_atSOX11 Chr:2p25
    814229700_atLOC148203 Chr:19p13.11
    97205347_s_atTMSNB Chr:xq21.33-q22.3
    1012228144_atZNF300 Chr:5q33.1
    119213668_s_atSOX4 Chr:6p22.3
    1211227921_at--- ---
    1310220898_at--- ---
    1415232668_at--- ---
    1513228790_atMGC39325 Chr:8q12.1

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)7
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1

    Created by SPC_HTML_REPORT on 12-Aug-2004 08:32:02