S1_using_G10

Super-paramagnetic Clustering of 84 points in a 95 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	15	S113	1437.cel
2	4	S113	1076.cel
3	18	S113	148.cel
4	21	S113	1553.cel
5	28	S113	1780.cel
6	7	S112 S115	129.cel
7	13	S112 S115	1399.cel
8	1	S112 S115	100R.cel
9	51	S112 S115	345.cel
10	70	S112 S115	57.cel
11	9	S112 S115	1308.cel
12	32	S112 S115	190.cel
13	20	S112 S115	15.cel
14	41	S112 S115	269.cel
15	43	S112 S115	283.cel
16	31	S115	1869RR.cel
17	39	S109 S110 S115	246.cel
18	33	S109 S110 S115	211.cel
19	16	S109 S110 S115	1453.cel
20	17	S109 S110 S115	147.cel
21	24	S109 S110 S115	159.cel
22	6	S109 S110 S115	1284.cel
23	56	S109 S110 S115	396.cel
24	82	S109 S110 S115	97.cel
25	25	S109 S110 S115	161.cel
26	26	S109 S110 S115	1621.cel
27	37	S109 S110 S115	236.cel
28	53	S109 S110 S115	356bis.cel
29	27	S109 S110 S115	1622R.cel
30	46	S109 S110 S115	30.cel
31	30	S109 S110 S115	1854R.cel
32	35	S109 S110 S115	218.cel
33	78	S109 S110 S115	84.cel
34	36	S109 S110 S115	222.cel
35	38	S109 S110 S115	242.cel
36	81	S109 S110 S115	94bis.cel
37	23	S109 S110 S115	157.cel
38	68	S109 S110 S115	563.cel
39	22	S109 S110 S115	155R.cel
40	57	S109 S110 S115	428.cel
41	48	S109 S110 S115	323.cel
42	69	S109 S110 S115	566.cel
43	60	S109 S110 S115	461.cel
44	10	S109 S110 S115	1317.cel
45	19	S109 S110 S115	1497R.cel
46	49	S109 S110 S115	328.cel
47	52	S109 S110 S115	349.cel
48	42	S109 S110 S115	274.cel
49	50	S109 S110 S115	344.cel
50	79	S109 S110 S115	90.cel
51	58	S109 S110 S115	444.cel
52	12	S109 S110 S115	1360.cel
53	61	S109 S110 S115	506.cel
54	40	S109 S110 S115	254.cel
55	62	S109 S110 S115	527.cel
56	59	S109 S110 S115	458.cel
57	74	S109 S110 S115	65R.cel
58	75	S109 S110 S115	70.cel
59	73	S109 S110 S115	63.cel
60	77	S110 S115	83.cel
61	3	S110 S115	106.cel
62	54	S110 S115	360.cel
63	80	S115	93.cel
64	14	S115	1430.cel
65	47	S115	300.cel
66	29	S111 S115	1795R.cel
67	44	S111 S115	284.cel
68	84	S111 S115	ge205.cel
69	67	S111 S115	558.cel
70	55	S111 S115	390.cel
71	45	S111 S115	288.cel
72	76	S111 S115	80.cel
73	83	S111 S115	ge197.cel
74	2	S115	104.cel
75	64	S115	534.cel
76	8	S115	1297.cel
77	65	S115	547.cel
78	11	S115	1357.cel
79	5	S114 S115	12.cel
80	63	S114 S115	528bis.cel
81	66	S114 S115	55.cel
82	71	S114 S115	574.cel
83	34	S115	212R.cel
84	72	S115	57R.cel

Genes Names

1	14	203798_s_at	VSNL1 Chr:2p24.3
2	66	228262_at	FLJ14503 Chr:xp22.13
3	28	206376_at	SLC6A15 Chr:12q21.3
4	65	227702_at	CYP4X1 Chr:1p33
5	29	206456_at	GABRA5 Chr:15q11.2-q12
6	93	243929_at	--- ---
7	52	219937_at	TRHDE Chr:12q15-q21
8	44	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	49	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	30	206678_at	GABRA1 Chr:5q34-q35
13	77	233002_at	KIAA1622 Chr:14q32.2
14	71	230137_at	FLJ30834 Chr:4q27
15	53	220030_at	STYK1 Chr:12p13.31
16	31	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	17	204081_at	NRGN Chr:11q24
20	39	213921_at	SST Chr:3q28
21	22	205113_at	NEF3 Chr:8p21
22	18	204229_at	SLC17A7 Chr:19q13
23	90	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	75	231489_x_at	--- ---
26	26	205827_at	CCK Chr:3p22-p21.3
27	94	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	60	224650_at	MAL2 Chr:8q23
31	16	203999_at	SYT1 Chr:12cen-q21
32	37	210247_at	SYN2 Chr:3p25
33	76	232426_at	--- ---
34	95	52837_at	KIAA1644 Chr:22q13
35	54	220359_s_at	ARPP-21 Chr:3p22.1
36	55	221217_s_at	A2BP1 Chr:16p13.3
37	15	203998_s_at	SYT1 Chr:12cen-q21
38	36	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	73	230551_at	--- ---
41	80	237384_x_at	--- ---
42	79	236456_at	PTPN5 Chr:11p15.1
43	89	241807_x_at	--- ---
44	24	205635_at	HAPIP Chr:3q21.2
45	40	214044_at	RYR2 Chr:1q42.1-q43
46	10	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	67	229039_at	SYN2 Chr:3p25
48	19	204546_at	KIAA0513 Chr:16q24.1
49	12	202507_s_at	SNAP25 Chr:20p12-p11.2
50	51	219671_at	HPCAL4 Chr:1p34.2
51	62	226086_at	SYT13 Chr:11p12-p11
52	23	205414_s_at	KIAA0672 Chr:17p12
53	50	219659_at	ATP8A2 Chr:13q12-13
54	35	210040_at	SLC12A5 Chr:20q13.12
55	87	241399_at	TAFA2 Chr:12q13.3-q14.1
56	61	225111_s_at	NAPB Chr:20p12.3-p11.21
57	85	239765_at	--- ---
58	64	227053_at	PACSIN1 Chr:6p21.3
59	45	214956_at	--- ---
60	83	239357_at	--- ---
61	41	214098_at	KIAA1107 Chr:1p22.1
62	43	214811_at	KIAA0318 Chr:12q24.33
63	59	224209_s_at	GDA Chr:9q21.11-21.33
64	25	205691_at	SYNGR3 Chr:16p13
65	33	209726_at	CA11 Chr:19q13.3
66	84	239579_at	ABHD7 Chr:1p22.1
67	58	224164_at	TPM3 Chr:1q21.2
68	68	229254_at	DKFZp761N1114 Chr:1q32.1
69	88	241672_at	LOC400120 Chr:13q13.2
70	46	215241_at	TMEM16C Chr:11p14.3
71	11	202260_s_at	STXBP1 Chr:9q34.1
72	27	206196_s_at	RPIP8 Chr:17q21.31
73	56	223529_at	SYT4 Chr:18q12.3
74	20	204722_at	SCN3B Chr:11q24.1
75	42	214230_at	CDC42 Chr:1p36.1
76	78	235066_at	MAP4 Chr:3p21
77	57	223654_s_at	BRUNOL4 Chr:18q12
78	82	238966_at	BRUNOL4 Chr:18q12
79	34	210016_at	MYT1L Chr:2p25.3
80	69	229300_at	--- ---
81	92	243666_at	BRUNOL4 Chr:18q12
82	13	202712_s_at	CKMT1 Chr:15q15
83	21	204723_at	SCN3B Chr:11q24.1
84	72	230262_at	--- ---
85	91	242999_at	ARHGEF7 Chr:13q34
86	32	209556_at	NCDN Chr:1p34.3
87	63	226382_at	LOC283070 Chr:10p14
88	9	1559545_at	--- ---
89	47	218623_at	HMP19 Chr:5q35.2
90	70	230076_at	FLJ10156 Chr:17p13.2
91	81	238786_at	--- ---
92	38	213904_at	--- ---
93	48	219308_s_at	AK5 Chr:1p31
94	74	230698_at	--- ---
95	86	239767_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	13
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 08:18:40

S1_using_G10

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC