# HMM for the "dishonest casino" presented by Durbin, Eddy, Krogh, Mitchison # in "Biological sequence analysis" (Cambridge University Press, 1998). # Exercise 1.1, p. 6 and p. 54, 56, 59, 61, 65 Alphabet: abcdef ################################################ State BEGIN E: 0 0 0 0 0 0 T: F 1 # Fair State F E: 0.1666 0.1666 0.1666 0.1666 0.1666 0.1666 T: F 0.95 L 0.049 END 0.001 # not fair State L E: 0.1 0.1 0.1 0.1 0.1 0.5 T: F 0.1 L 0.9 State END E: 0 0 0 0 0 0 T: END 0 ################################################ NULLMODEL: 0.1666 0.1666 0.1666 0.1666 0.1666 0.1666