On this page we have collected example results obtained by applying the differential expression analysis methods interfaced by compcodeR to the benchmarking data sets. Note that the files are large! Please note also that the results may be updated following updates of the differential expression methods, and that new methods may be added. However, there is no guarantee that the results available from this page will always correspond to the latest version of the methods. All information regarding version numbers etc. are available in the result objects. Please consult the vignette or the manual for more information about how to apply your own favorite method to the benchmarking data.
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (GLM), TCC | 19/11 2013 | download |
limma (+voom) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (GLM), TCC | 19/11 2013 | download |
limma (+voom) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |
Method | Date | Link |
---|---|---|
All methods | 19/11 2013 | download |
baySeq | 19/11 2013 | download |
DESeq (nbinom, GLM) | 19/11 2013 | download |
DESeq2 | 19/11 2013 | download |
DSS | 19/11 2013 | download |
edgeR (exact, GLM), TCC | 19/11 2013 | download |
HTSDiff | 19/11 2013 | download |
limma (+voom, vst, logcpm, sqrtcpm) | 19/11 2013 | download |
NBPSeq | 19/11 2013 | download |
NOISeq | 19/11 2013 | download |
SAMseq | 19/11 2013 | download |
t-test (+voom, vst, raw) | 19/11 2013 | download |